Perspective: Path Sampling Methods Applied to Enzymatic Catalysis
SD Schwartz - Journal of chemical theory and computation, 2022 - ACS Publications
This Perspective reviews the use of Transition Path Sampling methods to study
enzymatically catalyzed chemical reactions. First applied by our group to an enzymatic …
enzymatically catalyzed chemical reactions. First applied by our group to an enzymatic …
Substrate Turnover Dynamics Guide Ketol-Acid Reductoisomerase Redesign for Increased Specific Activity
E Karvelis, C Swanson, B Tidor - ACS catalysis, 2024 - ACS Publications
The task of adapting enzymes for specific applications is often hampered by our incomplete
ability to tune and tailor catalytic functions, particularly when seeking increased activity …
ability to tune and tailor catalytic functions, particularly when seeking increased activity …
Connecting conformational motions to rapid dynamics in human purine nucleoside phosphorylase
The influence of protein motions on enzyme catalysis remains a topic of active discussion.
Protein motions occur across a variety of time scales, from vibrational fluctuations in …
Protein motions occur across a variety of time scales, from vibrational fluctuations in …
The Evolution of the Acylation Mechanism in β-Lactamase and Rapid Protein Dynamics
β-Lactamases are a class of well-studied enzymes that are known to have existed since
billions of years ago, starting as a defense mechanism to stave off competitors and are now …
billions of years ago, starting as a defense mechanism to stave off competitors and are now …
Myosin-Catalyzed ATP Hydrolysis in the Presence of Disease-Causing Mutations: Mavacamten as a Way to Repair Mechanism
A Chakraborti, JC Tardiff… - The Journal of Physical …, 2024 - ACS Publications
Hypertrophic cardiomyopathy is one of the most common forms of genetic cardiomyopathy.
Mavacamten is a first-in-class myosin modulator that was identified via activity screening on …
Mavacamten is a first-in-class myosin modulator that was identified via activity screening on …
Transition Path Sampling Study of Engineered Enzymes That Catalyze the Morita–Baylis–Hillman Reaction: Why Is Enzyme Design so Difficult?
SG Balasubramani, K Korchagina… - Journal of Chemical …, 2024 - ACS Publications
It is hoped that artificial enzymes designed in laboratories can be efficient alternatives to
chemical catalysts that have been used to synthesize organic molecules. However, the …
chemical catalysts that have been used to synthesize organic molecules. However, the …
Atomistic description of the relationship between protein dynamics and catalysis with transition path sampling
Despite initial resistance, it has been increasingly accepted that protein dynamics plays a
role in enzymatic catalysis. There have been two lines of research. Some works study slow …
role in enzymatic catalysis. There have been two lines of research. Some works study slow …
A Tale of Two Myofilaments: Molecular Insights into Cardiac Muscle Function in Health and Disease
A Chakraborti - 2024 - repository.arizona.edu
Cardiac muscle function is critical for the heart to function properly but the complex
mechanism behind it is still not well understood, especially at the molecular level …
mechanism behind it is still not well understood, especially at the molecular level …