Salinity responses and tolerance mechanisms in underground vegetable crops: An integrative review

KN Chourasia, SJ More, A Kumar, D Kumar, B Singh… - Planta, 2022 - Springer
Main conclusion The present review gives an insight into the salinity stress tolerance
responses and mechanisms of underground vegetable crops. Phytoprotectants, agronomic …

Plant small heat shock proteins–evolutionary and functional diversity

ER Waters, E Vierling - New Phytologist, 2020 - Wiley Online Library
Small heat shock proteins (sHSPs) are an ubiquitous protein family found in archaea,
bacteria and eukaryotes. In plants, as in other organisms, sHSPs are upregulated by stress …

Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline

S Ou, W Su, Y Liao, K Chougule, JRA Agda… - Genome biology, 2019 - Springer
Background Sequencing technology and assembly algorithms have matured to the point
that high-quality de novo assembly is possible for large, repetitive genomes. Current …

A reference genome for pea provides insight into legume genome evolution

J Kreplak, MA Madoui, P Cápal, P Novák, K Labadie… - Nature …, 2019 - nature.com
We report the first annotated chromosome-level reference genome assembly for pea, Gregor
Mendel's original genetic model. Phylogenetics and paleogenomics show genomic …

LTR_retriever: a highly accurate and sensitive program for identification of long terminal repeat retrotransposons

S Ou, N Jiang - Plant physiology, 2018 - academic.oup.com
Long terminal repeat retrotransposons (LTR-RTs) are prevalent in plant genomes. The
identification of LTR-RTs is critical for achieving high-quality gene annotation. Based on the …

Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants

X Qiao, Q Li, H Yin, K Qi, L Li, R Wang, S Zhang… - Genome biology, 2019 - Springer
Background The sharp increase of plant genome and transcriptome data provide valuable
resources to investigate evolutionary consequences of gene duplication in a range of taxa …

The pineapple genome and the evolution of CAM photosynthesis

R Ming, R VanBuren, CM Wai, H Tang, MC Schatz… - Nature …, 2015 - nature.com
Abstract Pineapple (Ananas comosus (L.) Merr.) is the most economically valuable crop
possessing crassulacean acid metabolism (CAM), a photosynthetic carbon assimilation …

The opium poppy genome and morphinan production

L Guo, T Winzer, X Yang, Y Li, Z Ning, Z He, R Teodor… - Science, 2018 - science.org
Morphinan-based painkillers are derived from opium poppy (Papaver somniferum L.). We
report a draft of the opium poppy genome, with 2.72 gigabases assembled into 11 …

The Amborella Genome and the Evolution of Flowering Plants

Amborella Genome Project, VA Albert, WB Barbazuk… - Science, 2013 - science.org
Introduction Darwin famously characterized the rapid rise and early diversification of
flowering plants (angiosperms) in the fossil record as an “abominable mystery.” Identifying …

Evolution of plant genome architecture

JF Wendel, SA Jackson, BC Meyers, RA Wing - Genome biology, 2016 - Springer
We have witnessed an explosion in our understanding of the evolution and structure of plant
genomes in recent years. Here, we highlight three important emergent realizations:(1) that …