Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate
F Denoeud, S Henriet, S Mungpakdee, JM Aury… - Science, 2010 - science.org
Genomes of animals as different as sponges and humans show conservation of global
architecture. Here we show that multiple genomic features including transposon diversity …
architecture. Here we show that multiple genomic features including transposon diversity …
Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes
The nematode Caenorhabditis elegans is a popular model system in genetics, not least
because a majority of human disease genes are conserved in C. elegans. To generate a …
because a majority of human disease genes are conserved in C. elegans. To generate a …
Models for the retention of duplicate genes and their biological underpinnings
Gene content in genomes changes through several different processes, with gene
duplication being an important contributor to such changes. Gene duplication occurs over a …
duplication being an important contributor to such changes. Gene duplication occurs over a …
On the need for mechanistic models in computational genomics and metagenomics
DA Liberles, AI Teufel, L Liu… - Genome biology and …, 2013 - academic.oup.com
Computational genomics is now generating very large volumes of data that have the
potential to be used to address important questions in both basic biology and biomedicine …
potential to be used to address important questions in both basic biology and biomedicine …
Toward a general model for the evolutionary dynamics of gene duplicates
A Konrad, AI Teufel, JA Grahnen… - Genome biology and …, 2011 - academic.oup.com
Gene duplication is an important process in the functional divergence of genes and
genomes. Several processes have been described that lead to duplicate gene retention …
genomes. Several processes have been described that lead to duplicate gene retention …
Models for gene duplication when dosage balance works as a transition state to subsequent neo-or sub-functionalization
AI Teufel, L Liu, DA Liberles - BMC evolutionary biology, 2016 - Springer
Background Dosage balance has been described as an important process for the retention
of duplicate genes after whole genome duplication events. However, dosage balance is only …
of duplicate genes after whole genome duplication events. However, dosage balance is only …
Evolution under fluctuating environments explains observed robustness in metabolic networks
OS Soyer, T Pfeiffer - PLoS Computational Biology, 2010 - journals.plos.org
A high level of robustness against gene deletion is observed in many organisms. However, it
is still not clear which biochemical features underline this robustness and how these are …
is still not clear which biochemical features underline this robustness and how these are …
Duplication of OsHAP family genes and their association with heading date in rice
Abstract Heterotrimeric Heme Activator Protein (HAP) family genes are involved in the
regulation of flowering in plants. It is not clear how many HAP genes regulate heading date …
regulation of flowering in plants. It is not clear how many HAP genes regulate heading date …
Sequence of a complete chicken BG haplotype shows dynamic expansion and contraction of two gene lineages with particular expression patterns
J Salomonsen, JA Chattaway, ACY Chan… - PLoS …, 2014 - journals.plos.org
Many genes important in immunity are found as multigene families. The butyrophilin genes
are members of the B7 family, playing diverse roles in co-regulation and perhaps in antigen …
are members of the B7 family, playing diverse roles in co-regulation and perhaps in antigen …
The former annotated human pseudogene dihydrofolate reductase-like 1 (DHFRL1) is expressed and functional
G McEntee, S Minguzzi, K O'Brien… - Proceedings of the …, 2011 - National Acad Sciences
Human dihydrofolate reductase (DHFR) was previously thought to be the only enzyme
capable of the reduction of dihydrofolate to tetrahydrofolate; an essential reaction necessary …
capable of the reduction of dihydrofolate to tetrahydrofolate; an essential reaction necessary …