Some remarks on protein attribute prediction and pseudo amino acid composition
KC Chou - Journal of theoretical biology, 2011 - Elsevier
With the accomplishment of human genome sequencing, the number of sequence-known
proteins has increased explosively. In contrast, the pace is much slower in determining their …
proteins has increased explosively. In contrast, the pace is much slower in determining their …
A survey on methods for predicting polyadenylation sites from DNA sequences, bulk RNA-seq, and single-cell RNA-seq
Alternative polyadenylation (APA) plays important roles in modulating mRNA stability,
translation, and subcellular localization, and contributes extensively to shaping eukaryotic …
translation, and subcellular localization, and contributes extensively to shaping eukaryotic …
[HTML][HTML] Cell-PLoc 2.0: an improved package of web-servers for predicting subcellular localization of proteins in various organisms
KC Chou, HB Shen - Natural Science, 2010 - scirp.org
Cell-PLoc 2.0 is a package of web-servers evolved from Cell-PLoc (Chou, KC & Shen, HB,
Nature Protocols, 2008, 2: 153-162) by a top-down approach to improve the power for …
Nature Protocols, 2008, 2: 153-162) by a top-down approach to improve the power for …
AFP-Pred: A random forest approach for predicting antifreeze proteins from sequence-derived properties
KK Kandaswamy, KC Chou, T Martinetz… - Journal of theoretical …, 2011 - Elsevier
Some creatures living in extremely low temperatures can produce some special materials
called “antifreeze proteins”(AFPs), which can prevent the cell and body fluids from freezing …
called “antifreeze proteins”(AFPs), which can prevent the cell and body fluids from freezing …
Identifying bacterial virulent proteins by fusing a set of classifiers based on variants of Chou's pseudo amino acid composition and on evolutionary information
The availability of a reliable prediction method for prediction of bacterial virulent proteins has
several important applications in research efforts targeted aimed at finding novel drug …
several important applications in research efforts targeted aimed at finding novel drug …
iLoc-Gpos: a multi-layer classifier for predicting the subcellular localization of singleplex and multiplex Gram-positive bacterial proteins
By introducing the “multi-layer scale”, as well as hybridizing the information of gene ontology
and the sequential evolution information, a novel predictor, called iLoc-Gpos, has been …
and the sequential evolution information, a novel predictor, called iLoc-Gpos, has been …
Alternative polyadenylation and gene expression regulation in plants
Functioning as an essential step of pre‐mRNA processing, polyadenylation has been
realized in recent years to play an important regulatory role during eukaryotic gene …
realized in recent years to play an important regulatory role during eukaryotic gene …
Identify Golgi protein types with modified mahalanobis discriminant algorithm and pseudo amino acid composition
The Golgi apparatus is an important eukaryotic organelle. Successful prediction of Golgi
protein types can provide valuable information for elucidating protein functions involved in …
protein types can provide valuable information for elucidating protein functions involved in …
DeepPolyA: a convolutional neural network approach for polyadenylation site prediction
Polyadenylation (Poly (A)) plays crucial roles in gene regulation, especially in messenger
RNA metabolism, protein diversification, and protein localization. Accurate prediction of …
RNA metabolism, protein diversification, and protein localization. Accurate prediction of …
Poly (A) motif prediction using spectral latent features from human DNA sequences
Motivation: Polyadenylation is the addition of a poly (A) tail to an RNA molecule. Identifying
DNA sequence motifs that signal the addition of poly (A) tails is essential to improved …
DNA sequence motifs that signal the addition of poly (A) tails is essential to improved …