Potential and limits of a colloid approach to protein solutions
A Stradner, P Schurtenberger - Soft Matter, 2020 - pubs.rsc.org
Looking at globular proteins with the eyes of a colloid scientist has a long tradition, in fact a
significant part of the early colloid literature was focused on protein solutions. However, it …
significant part of the early colloid literature was focused on protein solutions. However, it …
Protein dynamics: from rattling in a cage to structural relaxation
S Khodadadi, AP Sokolov - Soft Matter, 2015 - pubs.rsc.org
We present an overview of protein dynamics based mostly on results of neutron scattering,
dielectric relaxation spectroscopy and molecular dynamics simulations. We identify several …
dielectric relaxation spectroscopy and molecular dynamics simulations. We identify several …
Dynamics of proteins in solution
The dynamics of proteins in solution includes a variety of processes, such as backbone and
side-chain fluctuations, interdomain motions, as well as global rotational and translational …
side-chain fluctuations, interdomain motions, as well as global rotational and translational …
Observation of small cluster formation in concentrated monoclonal antibody solutions and its implications to solution viscosity
EJ Yearley, PD Godfrin, T Perevozchikova, H Zhang… - Biophysical journal, 2014 - cell.com
Monoclonal antibodies (mAbs) are a major class of biopharmaceuticals. It is hypothesized
that some concentrated mAb solutions exhibit formation of a solution phase consisting of …
that some concentrated mAb solutions exhibit formation of a solution phase consisting of …
Protein dynamics in a broad frequency range: Dielectric spectroscopy studies
M Nakanishi, AP Sokolov - Journal of Non-Crystalline Solids, 2015 - Elsevier
We present detailed dielectric spectroscopy studies of dynamics in two hydrated proteins,
lysozyme and myoglobin. We emphasize the importance of explicit account for possible …
lysozyme and myoglobin. We emphasize the importance of explicit account for possible …
Solution scattering approaches to dynamical ordering in biomolecular systems
Clarification of solution structure and its modulation in proteins and protein complexes is
crucially important to understand dynamical ordering in macromolecular systems. Small …
crucially important to understand dynamical ordering in macromolecular systems. Small …
Metastable States in the Hinge-Bending Landscape of an Enzyme in an Atomistic Cytoplasm Simulation
PP Samuel Russell, AK Maytin… - The Journal of …, 2024 - ACS Publications
Many enzymes undergo major conformational changes to function in cells, particularly when
they bind to more than one substrate. We quantify the large-amplitude hinge-bending …
they bind to more than one substrate. We quantify the large-amplitude hinge-bending …
Rapid calculation of hydrodynamic and transport properties in concentrated solutions of colloidal particles and macromolecules
A new method for calculating the resistance tensors of arbitrarily shaped particles and the
translational and rotational self-diffusivity in suspensions of such particles is developed. This …
translational and rotational self-diffusivity in suspensions of such particles is developed. This …
Atomistic details of protein dynamics and the role of hydration water
S Khodadadi, AP Sokolov - Biochimica et Biophysica Acta (BBA)-General …, 2017 - Elsevier
Background The importance of protein dynamics for their biological activity is now well
recognized. Different experimental and computational techniques have been employed to …
recognized. Different experimental and computational techniques have been employed to …
Dynamic neutron scattering by biological systems
Dynamic neutron scattering directly probes motions in biological systems on femtosecond to
microsecond timescales. When combined with molecular dynamics simulation and normal …
microsecond timescales. When combined with molecular dynamics simulation and normal …