Potential and limits of a colloid approach to protein solutions

A Stradner, P Schurtenberger - Soft Matter, 2020 - pubs.rsc.org
Looking at globular proteins with the eyes of a colloid scientist has a long tradition, in fact a
significant part of the early colloid literature was focused on protein solutions. However, it …

Protein dynamics: from rattling in a cage to structural relaxation

S Khodadadi, AP Sokolov - Soft Matter, 2015 - pubs.rsc.org
We present an overview of protein dynamics based mostly on results of neutron scattering,
dielectric relaxation spectroscopy and molecular dynamics simulations. We identify several …

Dynamics of proteins in solution

M Grimaldo, F Roosen-Runge, F Zhang… - Quarterly Reviews of …, 2019 - cambridge.org
The dynamics of proteins in solution includes a variety of processes, such as backbone and
side-chain fluctuations, interdomain motions, as well as global rotational and translational …

Observation of small cluster formation in concentrated monoclonal antibody solutions and its implications to solution viscosity

EJ Yearley, PD Godfrin, T Perevozchikova, H Zhang… - Biophysical journal, 2014 - cell.com
Monoclonal antibodies (mAbs) are a major class of biopharmaceuticals. It is hypothesized
that some concentrated mAb solutions exhibit formation of a solution phase consisting of …

Protein dynamics in a broad frequency range: Dielectric spectroscopy studies

M Nakanishi, AP Sokolov - Journal of Non-Crystalline Solids, 2015 - Elsevier
We present detailed dielectric spectroscopy studies of dynamics in two hydrated proteins,
lysozyme and myoglobin. We emphasize the importance of explicit account for possible …

Solution scattering approaches to dynamical ordering in biomolecular systems

P Bernadó, N Shimizu, G Zaccai, H Kamikubo… - … et Biophysica Acta (BBA …, 2018 - Elsevier
Clarification of solution structure and its modulation in proteins and protein complexes is
crucially important to understand dynamical ordering in macromolecular systems. Small …

Metastable States in the Hinge-Bending Landscape of an Enzyme in an Atomistic Cytoplasm Simulation

PP Samuel Russell, AK Maytin… - The Journal of …, 2024 - ACS Publications
Many enzymes undergo major conformational changes to function in cells, particularly when
they bind to more than one substrate. We quantify the large-amplitude hinge-bending …

Rapid calculation of hydrodynamic and transport properties in concentrated solutions of colloidal particles and macromolecules

JW Swan, G Wang - Physics of Fluids, 2016 - pubs.aip.org
A new method for calculating the resistance tensors of arbitrarily shaped particles and the
translational and rotational self-diffusivity in suspensions of such particles is developed. This …

Atomistic details of protein dynamics and the role of hydration water

S Khodadadi, AP Sokolov - Biochimica et Biophysica Acta (BBA)-General …, 2017 - Elsevier
Background The importance of protein dynamics for their biological activity is now well
recognized. Different experimental and computational techniques have been employed to …

Dynamic neutron scattering by biological systems

JC Smith, P Tan, L Petridis… - Annual review of …, 2018 - annualreviews.org
Dynamic neutron scattering directly probes motions in biological systems on femtosecond to
microsecond timescales. When combined with molecular dynamics simulation and normal …