Biological sequence classification: A review on data and general methods

C Ao, S Jiao, Y Wang, L Yu, Q Zou - Research, 2022 - spj.science.org
With the rapid development of biotechnology, the number of biological sequences has
grown exponentially. The continuous expansion of biological sequence data promotes the …

Data-driven classification of ligand unbinding pathways

D Ray, M Parrinello - … of the National Academy of Sciences, 2024 - National Acad Sciences
Studying the pathways of ligand–receptor binding is essential to understand the mechanism
of target recognition by small molecules. The binding free energy and kinetics of protein …

[HTML][HTML] ML-DSP: Machine Learning with Digital Signal Processing for ultrafast, accurate, and scalable genome classification at all taxonomic levels

GS Randhawa, KA Hill, L Kari - BMC genomics, 2019 - Springer
Background Although software tools abound for the comparison, analysis, identification, and
classification of genomic sequences, taxonomic classification remains challenging due to …

[HTML][HTML] Dynamic time warping as a new evaluation for Dst forecast with machine learning

B Laperre, J Amaya, G Lapenta - Frontiers in Astronomy and Space …, 2020 - frontiersin.org
Models based on neural networks and machine learning are seeing a rise in popularity in
space physics. In particular, the forecasting of geomagnetic indices with neural network …

Mithra: Anomaly detection as an oracle for cyberphysical systems

A Afzal, C Le Goues… - IEEE Transactions on …, 2021 - ieeexplore.ieee.org
Testing plays an essential role in ensuring the safety and quality of cyberphysical systems
(CPSs). One of the main challenges in automated and software-in-the-loop simulation …

An inner boundary condition for solar wind models based on coronal density

KA Bunting, H Morgan - Journal of Space Weather and Space …, 2022 - swsc-journal.org
Accurate forecasting of the solar wind has grown in importance as society becomes
increasingly dependent on technology susceptible to space weather events. This work …

Mammogram classification using dynamic time warping

SJS Gardezi, I Faye, JM Sanchez Bornot… - Multimedia Tools and …, 2018 - Springer
This paper presents a new approach for breast cancer classification using time series
analysis. In particular, the region of interest (ROI) in mammogram images is classified as …

A novel distance measure based on dynamic time warping to improve time series classification

Y Liu, YA Zhang, M Zeng, J Zhao - Information Sciences, 2024 - Elsevier
Dynamic time warping (DTW) is the most widely used method to evaluate the similarity
between time series. However, the DTW distance only takes into account the difference in …

Stochastic modeling of Dalbulus maidis, vector of maize diseases

RHB Rubio, M Otero - Theoretical Population Biology, 2023 - Elsevier
We developed a simple linear stochastic model for Dalbulus maidis dependent exclusively
on temperature, whose parameters were determined from published field and laboratory …

[HTML][HTML] A new method to analyze protein sequence similarity using dynamic time warping

W Hou, Q Pan, Q Peng, M He - Genomics, 2017 - Elsevier
Sequences similarity analysis is one of the major topics in bioinformatics. It helps
researchers to reveal evolution relationships of different species. In this paper, we outline a …