Biological sequence classification: A review on data and general methods
C Ao, S Jiao, Y Wang, L Yu, Q Zou - Research, 2022 - spj.science.org
With the rapid development of biotechnology, the number of biological sequences has
grown exponentially. The continuous expansion of biological sequence data promotes the …
grown exponentially. The continuous expansion of biological sequence data promotes the …
Data-driven classification of ligand unbinding pathways
D Ray, M Parrinello - … of the National Academy of Sciences, 2024 - National Acad Sciences
Studying the pathways of ligand–receptor binding is essential to understand the mechanism
of target recognition by small molecules. The binding free energy and kinetics of protein …
of target recognition by small molecules. The binding free energy and kinetics of protein …
[HTML][HTML] ML-DSP: Machine Learning with Digital Signal Processing for ultrafast, accurate, and scalable genome classification at all taxonomic levels
Background Although software tools abound for the comparison, analysis, identification, and
classification of genomic sequences, taxonomic classification remains challenging due to …
classification of genomic sequences, taxonomic classification remains challenging due to …
[HTML][HTML] Dynamic time warping as a new evaluation for Dst forecast with machine learning
B Laperre, J Amaya, G Lapenta - Frontiers in Astronomy and Space …, 2020 - frontiersin.org
Models based on neural networks and machine learning are seeing a rise in popularity in
space physics. In particular, the forecasting of geomagnetic indices with neural network …
space physics. In particular, the forecasting of geomagnetic indices with neural network …
Mithra: Anomaly detection as an oracle for cyberphysical systems
A Afzal, C Le Goues… - IEEE Transactions on …, 2021 - ieeexplore.ieee.org
Testing plays an essential role in ensuring the safety and quality of cyberphysical systems
(CPSs). One of the main challenges in automated and software-in-the-loop simulation …
(CPSs). One of the main challenges in automated and software-in-the-loop simulation …
An inner boundary condition for solar wind models based on coronal density
KA Bunting, H Morgan - Journal of Space Weather and Space …, 2022 - swsc-journal.org
Accurate forecasting of the solar wind has grown in importance as society becomes
increasingly dependent on technology susceptible to space weather events. This work …
increasingly dependent on technology susceptible to space weather events. This work …
Mammogram classification using dynamic time warping
This paper presents a new approach for breast cancer classification using time series
analysis. In particular, the region of interest (ROI) in mammogram images is classified as …
analysis. In particular, the region of interest (ROI) in mammogram images is classified as …
A novel distance measure based on dynamic time warping to improve time series classification
Y Liu, YA Zhang, M Zeng, J Zhao - Information Sciences, 2024 - Elsevier
Dynamic time warping (DTW) is the most widely used method to evaluate the similarity
between time series. However, the DTW distance only takes into account the difference in …
between time series. However, the DTW distance only takes into account the difference in …
Stochastic modeling of Dalbulus maidis, vector of maize diseases
RHB Rubio, M Otero - Theoretical Population Biology, 2023 - Elsevier
We developed a simple linear stochastic model for Dalbulus maidis dependent exclusively
on temperature, whose parameters were determined from published field and laboratory …
on temperature, whose parameters were determined from published field and laboratory …
[HTML][HTML] A new method to analyze protein sequence similarity using dynamic time warping
W Hou, Q Pan, Q Peng, M He - Genomics, 2017 - Elsevier
Sequences similarity analysis is one of the major topics in bioinformatics. It helps
researchers to reveal evolution relationships of different species. In this paper, we outline a …
researchers to reveal evolution relationships of different species. In this paper, we outline a …