[PDF][PDF] The CCP4 suite: integrative software for macromolecular crystallography
The Collaborative Computational Project No. 4 (CCP4) is a UK-led international collective
with a mission to develop, test, distribute and promote software for macromolecular …
with a mission to develop, test, distribute and promote software for macromolecular …
Assessment of three‐dimensional RNA structure prediction in CASP15
The prediction of RNA three‐dimensional structures remains an unsolved problem. Here, we
report assessments of RNA structure predictions in CASP15, the first CASP exercise that …
report assessments of RNA structure predictions in CASP15, the first CASP exercise that …
AlphaFold two years on: Validation and impact
O Kovalevskiy, J Mateos-Garcia… - Proceedings of the …, 2024 - pnas.org
Two years on from the initial release of AlphaFold, we have seen its widespread adoption as
a structure prediction tool. Here, we discuss some of the latest work based on AlphaFold …
a structure prediction tool. Here, we discuss some of the latest work based on AlphaFold …
Structure of the Ndc80 complex and its interactions at the yeast kinetochore–microtubule interface
JA Zahm, S Jenni, SC Harrison - Open biology, 2023 - royalsocietypublishing.org
The conserved Ndc80 kinetochore complex, Ndc80c, is the principal link between mitotic
spindle microtubules and centromere-associated proteins. We used AlphaFold 2 (AF2) to …
spindle microtubules and centromere-associated proteins. We used AlphaFold 2 (AF2) to …
Structural insights into phosphatidylethanolamine N-methyltransferase PmtA mediating bacterial phosphatidylcholine synthesis
SD Salsabila, J Kim - Science Advances, 2024 - science.org
Phosphatidylethanolamine N-methyltransferase (PmtA) catalyzes the biosynthesis of
phosphatidylcholine (PC) from phosphatidylethanolamine (PE). Although PC is one of the …
phosphatidylcholine (PC) from phosphatidylethanolamine (PE). Although PC is one of the …
The activation cascade of the broad-spectrum antiviral bemnifosbuvir characterized at atomic resolution
A Chazot, C Zimberger, M Feracci, A Moussa… - Plos …, 2024 - journals.plos.org
Bemnifosbuvir (AT-527) and AT-752 are guanosine analogues currently in clinical trials
against several RNA viruses. Here, we show that these drugs require a minimal set of 5 …
against several RNA viruses. Here, we show that these drugs require a minimal set of 5 …
[PDF][PDF] Predicted models and CCP4
AJ Simpkin, I Caballero, S McNicholas… - … Section D: Structural …, 2023 - journals.iucr.org
In late 2020, the results of CASP14, the 14th event in a series of competitions to assess the
latest developments in computational protein structure-prediction methodology, revealed the …
latest developments in computational protein structure-prediction methodology, revealed the …
[PDF][PDF] A simple goniometer-compatible flow cell for serial synchrotron X-ray crystallography
S Ghosh, D Zorić, P Dahl, M Bjelčić… - Journal of Applied …, 2023 - journals.iucr.org
Serial femtosecond crystallography was initially developed for room-temperature X-ray
diffraction studies of macromolecules at X-ray free electron lasers. When combined with …
diffraction studies of macromolecules at X-ray free electron lasers. When combined with …
[PDF][PDF] Verification: model-free phasing with enhanced predicted models in ARCIMBOLDO_SHREDDER
Structure predictions have matched the accuracy of experimental structures from close
homologues, providing suitable models for molecular replacement phasing. Even in …
homologues, providing suitable models for molecular replacement phasing. Even in …
Design, synthesis, and evaluation of antitumor activity of 2-arylmethoxy-4-(2-fluoromethyl-biphenyl-3-ylmethoxy) benzylamine derivatives as PD-1/PD-l1 inhibitors
F Zhang, H Zhang, S Zhou, J Plewka, M Wang… - European Journal of …, 2024 - Elsevier
A series of novel 2-arylmethoxy-4-(2-fluoromethyl-biphenyl-3-ylmethoxy) benzylamine
derivatives was designed, synthesized, and evaluated for their antitumor effects as PD-1/PD …
derivatives was designed, synthesized, and evaluated for their antitumor effects as PD-1/PD …