[PDF][PDF] The CCP4 suite: integrative software for macromolecular crystallography

J Agirre, M Atanasova, H Bagdonas… - … Section D: Structural …, 2023 - journals.iucr.org
The Collaborative Computational Project No. 4 (CCP4) is a UK-led international collective
with a mission to develop, test, distribute and promote software for macromolecular …

Assessment of three‐dimensional RNA structure prediction in CASP15

R Das, RC Kretsch, AJ Simpkin… - Proteins: Structure …, 2023 - Wiley Online Library
The prediction of RNA three‐dimensional structures remains an unsolved problem. Here, we
report assessments of RNA structure predictions in CASP15, the first CASP exercise that …

AlphaFold two years on: Validation and impact

O Kovalevskiy, J Mateos-Garcia… - Proceedings of the …, 2024 - pnas.org
Two years on from the initial release of AlphaFold, we have seen its widespread adoption as
a structure prediction tool. Here, we discuss some of the latest work based on AlphaFold …

Structure of the Ndc80 complex and its interactions at the yeast kinetochore–microtubule interface

JA Zahm, S Jenni, SC Harrison - Open biology, 2023 - royalsocietypublishing.org
The conserved Ndc80 kinetochore complex, Ndc80c, is the principal link between mitotic
spindle microtubules and centromere-associated proteins. We used AlphaFold 2 (AF2) to …

Structural insights into phosphatidylethanolamine N-methyltransferase PmtA mediating bacterial phosphatidylcholine synthesis

SD Salsabila, J Kim - Science Advances, 2024 - science.org
Phosphatidylethanolamine N-methyltransferase (PmtA) catalyzes the biosynthesis of
phosphatidylcholine (PC) from phosphatidylethanolamine (PE). Although PC is one of the …

The activation cascade of the broad-spectrum antiviral bemnifosbuvir characterized at atomic resolution

A Chazot, C Zimberger, M Feracci, A Moussa… - Plos …, 2024 - journals.plos.org
Bemnifosbuvir (AT-527) and AT-752 are guanosine analogues currently in clinical trials
against several RNA viruses. Here, we show that these drugs require a minimal set of 5 …

[PDF][PDF] Predicted models and CCP4

AJ Simpkin, I Caballero, S McNicholas… - … Section D: Structural …, 2023 - journals.iucr.org
In late 2020, the results of CASP14, the 14th event in a series of competitions to assess the
latest developments in computational protein structure-prediction methodology, revealed the …

[PDF][PDF] A simple goniometer-compatible flow cell for serial synchrotron X-ray crystallography

S Ghosh, D Zorić, P Dahl, M Bjelčić… - Journal of Applied …, 2023 - journals.iucr.org
Serial femtosecond crystallography was initially developed for room-temperature X-ray
diffraction studies of macromolecules at X-ray free electron lasers. When combined with …

[PDF][PDF] Verification: model-free phasing with enhanced predicted models in ARCIMBOLDO_SHREDDER

A Medina, E Jiménez, I Caballero… - … Section D: Structural …, 2022 - journals.iucr.org
Structure predictions have matched the accuracy of experimental structures from close
homologues, providing suitable models for molecular replacement phasing. Even in …

Design, synthesis, and evaluation of antitumor activity of 2-arylmethoxy-4-(2-fluoromethyl-biphenyl-3-ylmethoxy) benzylamine derivatives as PD-1/PD-l1 inhibitors

F Zhang, H Zhang, S Zhou, J Plewka, M Wang… - European Journal of …, 2024 - Elsevier
A series of novel 2-arylmethoxy-4-(2-fluoromethyl-biphenyl-3-ylmethoxy) benzylamine
derivatives was designed, synthesized, and evaluated for their antitumor effects as PD-1/PD …