A survey on nature inspired metaheuristic algorithms for partitional clustering

SJ Nanda, G Panda - Swarm and Evolutionary computation, 2014 - Elsevier
The partitional clustering concept started with K-means algorithm which was published in
1957. Since then many classical partitional clustering algorithms have been reported based …

On the analysis and interpretation of correlations in metabolomic data

R Steuer - Briefings in bioinformatics, 2006 - academic.oup.com
A remarkable inherent feature of cellular metabolism is that the concentrations of a small but
significant number of metabolites are strongly correlated when measurements of biological …

Data clustering: 50 years beyond K-means

AK Jain - Pattern recognition letters, 2010 - Elsevier
Organizing data into sensible groupings is one of the most fundamental modes of
understanding and learning. As an example, a common scheme of scientific classification …

[HTML][HTML] A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen

J Moffat, DA Grueneberg, X Yang, SY Kim, AM Kloepfer… - Cell, 2006 - cell.com
To enable arrayed or pooled loss-of-function screens in a wide range of mammalian cell
types, including primary and nondividing cells, we are developing lentiviral short hairpin …

Reverse engineering of regulatory networks in human B cells

K Basso, AA Margolin, G Stolovitzky, U Klein… - Nature …, 2005 - nature.com
Cellular phenotypes are determined by the differential activity of networks linking
coregulated genes. Available methods for the reverse engineering of such networks from …

An efficient k-means clustering filtering algorithm using density based initial cluster centers

KM Kumar, ARM Reddy - Information Sciences, 2017 - Elsevier
Abstract k-means is a preeminent partitional based clustering method that finds k clusters
from the given dataset by computing distances from each point to k cluster centers iteratively …

[图书][B] Pattern discovery in bioinformatics: theory & algorithms

L Parida - 2007 - taylorfrancis.com
The computational methods of bioinformatics are being used more and more to process the
large volume of current biological data. Promoting an understanding of the underlying …

Network analysis of human glaucomatous optic nerve head astrocytes

T Nikolskaya, Y Nikolsky, T Serebryiskaya… - BMC medical …, 2009 - Springer
Background Astrocyte activation is a characteristic response to injury in the central nervous
system, and can be either neurotoxic or neuroprotective, while the regulation of both roles …

Logical Entity Representation in Knowledge-Graphs for Differentiable Rule Learning

C Han, Q He, C Yu, X Du, H Tong, H Ji - arXiv preprint arXiv:2305.12738, 2023 - arxiv.org
Probabilistic logical rule learning has shown great strength in logical rule mining and
knowledge graph completion. It learns logical rules to predict missing edges by reasoning …

Structure learning of probabilistic graphical models: a comprehensive survey

Y Zhou - arXiv preprint arXiv:1111.6925, 2011 - arxiv.org
Probabilistic graphical models combine the graph theory and probability theory to give a
multivariate statistical modeling. They provide a unified description of uncertainty using …