[HTML][HTML] The atomistic modeling of light-harvesting complexes from the physical models to the computational protocol

E Cignoni, V Slama, L Cupellini… - The Journal of Chemical …, 2022 - pubs.aip.org
The function of light-harvesting complexes is determined by a complex network of dynamic
interactions among all the different components: the aggregate of pigments, the protein, and …

Quantum dynamical effects of vibrational strong coupling in chemical reactivity

LP Lindoy, A Mandal, DR Reichman - Nature Communications, 2023 - nature.com
Recent experiments suggest that ground state chemical reactivity can be modified when
placing molecular systems inside infrared cavities where molecular vibrations are strongly …

Vibronic and environmental effects in simulations of optical spectroscopy

TJ Zuehlsdorff, SV Shedge, SY Lu… - Annual Review of …, 2021 - annualreviews.org
Including both environmental and vibronic effects is important for accurate simulation of
optical spectra, but combining these effects remains computationally challenging. We outline …

Elucidating the role of hydrogen bonding in the optical spectroscopy of the solvated green fluorescent protein chromophore: Using machine learning to establish the …

MS Chen, Y Mao, A Snider, P Gupta… - The Journal of …, 2023 - ACS Publications
Hydrogen bonding interactions with chromophores in chemical and biological environments
play a key role in determining their electronic absorption and relaxation processes, which …

[HTML][HTML] Influence of non-adiabatic effects on linear absorption spectra in the condensed phase: Methylene blue

AJ Dunnett, D Gowland, CM Isborn, AW Chin… - The journal of …, 2021 - pubs.aip.org
Modeling linear absorption spectra of solvated chromophores is highly challenging as
contributions are present both from coupling of the electronic states to nuclear vibrations and …

Exploiting machine learning to efficiently predict multidimensional optical spectra in complex environments

MS Chen, TJ Zuehlsdorff, T Morawietz… - The Journal of …, 2020 - ACS Publications
The excited-state dynamics of chromophores in complex environments determine a range of
vital biological and energy capture processes. Time-resolved, multidimensional optical …

Beyond the Condon limit: Condensed phase optical spectra from atomistic simulations

ZR Wiethorn, KE Hunter, TJ Zuehlsdorff… - The Journal of …, 2023 - pubs.aip.org
While dark transitions made bright by molecular motions determine the optoelectronic
properties of many materials, simulating such non-Condon effects in condensed phase …

[HTML][HTML] Nonlinear spectroscopy in the condensed phase: The role of Duschinsky rotations and third order cumulant contributions

TJ Zuehlsdorff, H Hong, L Shi, CM Isborn - The Journal of Chemical …, 2020 - pubs.aip.org
First-principles modeling of nonlinear optical spectra in the condensed phase is highly
challenging because both environment and vibronic interactions can play a large role in …

Environmentally Driven Symmetry Breaking Quenches Dual Fluorescence in Proflavine

KE Hunter, Y Mao, AW Chin… - The Journal of Physical …, 2024 - ACS Publications
Nonadiabatic couplings between several electronic excited states are ubiquitous in many
organic chromophores and can significantly influence optical properties. A recent …

Taming the third order cumulant approximation to linear optical spectroscopy

L Allan, TJ Zuehlsdorff - The Journal of Chemical Physics, 2024 - pubs.aip.org
The second order cumulant method offers a promising pathway to predicting optical
properties in condensed phase systems. It allows for the computation of linear absorption …