[HTML][HTML] Deciphering bacterial epigenomes using modern sequencing technologies

J Beaulaurier, EE Schadt, G Fang - Nature Reviews Genetics, 2019 - nature.com
Prokaryotic DNA contains three types of methylation: N6-methyladenine, N4-methylcytosine
and 5-methylcytosine. The lack of tools to analyse the frequency and distribution of …

Phasevarions of bacterial pathogens–phase-variable epigenetic regulators evolving from restriction–modification systems

ZN Phillips, AU Husna, MP Jennings… - …, 2019 - microbiologyresearch.org
Phase-variable DNA methyltransferases control the expression of multiple genes via
epigenetic mechanisms in a wide variety of bacterial species. These systems are called …

Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains

JL Draper, LM Hansen, DL Bernick, S Abedrabbo… - MBio, 2017 - Am Soc Microbiol
Many bacterial genomes are highly variable but nonetheless are typically published as a
single assembled genome. Experiments tracking bacterial genome evolution have not …

Large-Scale Release of Campylobacter Draft Genomes: Resources for Food Safety and Public Health from the 100K Pathogen Genome Project

AM Weis, BC Huang, DB Storey, N Kong… - Genome …, 2017 - Am Soc Microbiol
Campylobacter is a food-associated bacterium and a leading cause of foodborne illness
worldwide, being associated with poultry in the food supply. This is the initial public release …

[HTML][HTML] Food authentication from shotgun sequencing reads with an application on high protein powders

N Haiminen, S Edlund, D Chambliss, M Kunitomi… - NPJ science of …, 2019 - nature.com
Here we propose that using shotgun sequencing to examine food leads to accurate
authentication of ingredients and detection of contaminants. To demonstrate this, we …

Characterization of the type I restriction modification system broadly conserved among group A streptococci

S DebRoy, WC Shropshire, CN Tran, H Hao, M Gohel… - Msphere, 2021 - Am Soc Microbiol
Although prokaryotic DNA methylation investigations have long focused on immunity against
exogenous DNA, it has been recently recognized that DNA methylation impacts gene …

[HTML][HTML] The complete methylome of an entomopathogenic bacterium reveals the existence of loci with unmethylated Adenines

A Payelleville, L Legrand, JC Ogier, C Roques… - Scientific Reports, 2018 - nature.com
DNA methylation can serve to control diverse phenomena in eukaryotes and prokaryotes,
including gene regulation leading to cell differentiation. In bacteria, DNA methylomes (ie …

socru: typing of genome-level order and orientation around ribosomal operons in bacteria

AJ Page, EV Ainsworth… - Microbial …, 2020 - microbiologyresearch.org
Rearrangements of large genome fragments occur in bacteria between repeat sequences
and can impact on growth and gene expression. Homologous recombination resulting in …

Lineage‐specific evolution and gene flow in Listeria monocytogenes are independent of bacteriophages

R Zamudio, RD Haigh, JD Ralph… - Environmental …, 2020 - Wiley Online Library
Listeria monocytogenes is a foodborne pathogen causing systemic infection with high
mortality. To allow efficient tracking of outbreaks a clear definition of the genomic signature …

[HTML][HTML] First Comparative Analysis of Clostridium septicum Genomes Provides Insights Into the Taxonomy, Species Genetic Diversity, and Virulence Related to Gas …

P Thomas, MY Abdel-Glil, A Subbaiyan… - Frontiers in …, 2021 - frontiersin.org
Clostridium septicum is a Gram-positive, toxin-producing, and spore-forming bacterium that
is recognized, together with C. perfringens, as the most important etiologic agent of …