Highway or byway: the metabolic role of the GABA shunt in plants

A Fait, H Fromm, D Walter, G Galili, AR Fernie - Trends in plant science, 2008 - cell.com
Much of the recent work on the γ-aminobutyrate (GABA) shunt in plants has concentrated on
stress/pest-associated and signalling roles. However, fifty years after the structural …

Pyrimidine and purine biosynthesis and degradation in plants

R Zrenner, M Stitt, U Sonnewald… - Annu. Rev. Plant Biol., 2006 - annualreviews.org
Nucleotide metabolism operates in all living organisms, embodies an evolutionarily ancient
and indispensable complex of metabolic pathways and is of utmost importance for plant …

ATTED-II v11: a plant gene coexpression database using a sample balancing technique by subagging of principal components

T Obayashi, H Hibara, Y Kagaya, Y Aoki… - Plant and Cell …, 2022 - academic.oup.com
Abstract ATTED-II (https://atted. jp) is a gene coexpression database for nine plant species
based on publicly available RNAseq and microarray data. One of the challenges in …

Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis

T Czechowski, M Stitt, T Altmann, MK Udvardi… - Plant …, 2005 - academic.oup.com
Gene transcripts with invariant abundance during development and in the face of
environmental stimuli are essential reference points for accurate gene expression analyses …

GMD@ CSB. DB: the Golm metabolome database

J Kopka, N Schauer, S Krueger, C Birkemeyer… - …, 2005 - academic.oup.com
Metabolomics, in particular gas chromatography–mass spectrometry (GC–MS) based
metabolite profiling of biological extracts, is rapidly becoming one of the cornerstones of …

[图书][B] Analysis of biological networks

BH Junker, F Schreiber - 2008 - Wiley Online Library
Analysis of biological networks ANALYSIS OF BIOLOGICAL NETWORKS Page 2
ANALYSIS OF BIOLOGICAL NETWORKS EDITED BY BJO RN H. JUNKER and FALK …

Co‐expression tools for plant biology: opportunities for hypothesis generation and caveats

B Usadel, T Obayashi, M Mutwil… - Plant, cell & …, 2009 - Wiley Online Library
Gene co‐expression analysis has emerged in the past 5 years as a powerful tool for gene
function prediction. In essence, co‐expression analysis asks the question 'what are the …

Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses

B Usadel, A Nagel, O Thimm, H Redestig… - Plant …, 2005 - academic.oup.com
MapMan is a user-driven tool that displays large genomics datasets onto diagrams of
metabolic pathways or other processes. Here, we present new developments, including …

Arabidopsis and primary photosynthetic metabolism–more than the icing on the cake

M Stitt, J Lunn, B Usadel - The Plant Journal, 2010 - Wiley Online Library
Historically speaking, Arabidopsis was not the plant of choice for investigating
photosynthesis, with physiologists and biochemists favouring other species such as …

Plastidial Thioredoxin z Interacts with Two Fructokinase-Like Proteins in a Thiol-Dependent Manner: Evidence for an Essential Role in Chloroplast Development in Arabidopsis …

B Arsova, U Hoja, M Wimmelbacher, E Greiner… - The Plant …, 2010 - academic.oup.com
Here, we characterize a plastidial thioredoxin (TRX) isoform from Arabidopsis thaliana that
defines a previously unknown branch of plastidial TRXs lying between x-and y-type TRXs …