Abstracting the differential semantics of rule-based models: exact and automated model reduction

V Danos, J Feret, W Fontana… - 2010 25th Annual …, 2010 - ieeexplore.ieee.org
Rule-based approaches (as in our own Kappa, or the BNG language, or many other
propositions allowing the consideration of" reaction classes'') offer new and more powerful …

Object‐sensitive cost analysis for concurrent objects

E Albert, P Arenas, J Correas, S Genaim… - Software Testing …, 2015 - Wiley Online Library
This article presents a novel cost analysis framework for concurrent objects. Concurrent
objects form a well‐established model for distributed concurrent systems. In this model …

[HTML][HTML] Causal static analysis for brane calculi

C Bodei, R Gori, F Levi - Theoretical Computer Science, 2015 - Elsevier
We present here a static analysis, based on Abstract Interpretation [8], obtained by defining
an abstract version of the causal semantics for the Mate/Bud/Drip (MBD) version of Brane …

Abstract interpretation based verification of temporal properties for bioambients

R Gori, F Levi - Information and Computation, 2010 - Elsevier
This paper concerns the application of formal methods to biological systems, modeled
specifically in BioAmbients, a variant of the Mobile Ambients calculus. Following the …

[HTML][HTML] A static analysis for Brane Calculi providing global occurrence counting information

C Bodei, L Brodo, R Gori, F Levi, A Bernini… - Theoretical Computer …, 2017 - Elsevier
In this paper we propose a static analysis for Brane Calculi [1], based on Abstract
Interpretation [2] techniques. Our analysis statically approximates the dynamic behaviour of …

An analysis for proving temporal properties of biological systems

R Gori, F Levi - Asian Symposium on Programming Languages and …, 2006 - Springer
This paper concerns the application of formal methods to biological systems, modeled
specifically in BioAmbients [34], a variant of the Mobile Ambients [4] calculus. Following the …

An analysis for causal properties of membrane interactions

C Bodei, R Gori, F Levi - Electronic Notes in Theoretical Computer Science, 2013 - Elsevier
We present here an analysis, based on Abstract Interpretation [P. Cousot and R. Cousot.
Abstract Interpretation: A Unified Lattice Model for Static Analysis of Programs by …

Approximating probabilistic behaviors of biological systems using abstract interpretation

A Coletta, R Gori, F Levi - Electronic Notes in Theoretical Computer Science, 2009 - Elsevier
In this paper we apply the Abstract Interpretation approach [P. Cousot and R. Cousot.
Abstract Interpretation: A Unified Lattice Model for Static Analysis of Programs by …

A global occurrence counting analysis for brane calculi

C Bodei, L Brodo, R Gori, D Hermith, F Levi - … 2015, Siena, Italy, July 13-15 …, 2015 - Springer
We propose a polynomial static analysis for Brane Calculi [6], based on Abstract
Interpretation [8] techniques. The analysis provides a description of the possible hierarchical …

Language based techniques for systems biology

H Pilegaard - 2007 - orbit.dtu.dk
Process calculus is the common denominator for a class of compact, idealised, domain-
specific formalisms normally associated with the study of reactive concurrent systems within …