Enhancing genetic gain through genomic selection: from livestock to plants

Y Xu, X Liu, J Fu, H Wang, J Wang, C Huang… - Plant …, 2020 - cell.com
Although long-term genetic gain has been achieved through increasing use of modern
breeding methods and technologies, the rate of genetic gain needs to be accelerated to …

Big data analytics and precision animal agriculture symposium: Machine learning and data mining advance predictive big data analysis in precision animal agriculture

G Morota, RV Ventura, FF Silva… - Journal of animal …, 2018 - academic.oup.com
Precision animal agriculture is poised to rise to prominence in the livestock enterprise in the
domains of management, production, welfare, sustainability, health surveillance, and …

Metabolomic selection for enhanced fruit flavor

V Colantonio, LFV Ferrão, DM Tieman… - Proceedings of the …, 2022 - National Acad Sciences
Although they are staple foods in cuisines globally, many commercial fruit varieties have
become progressively less flavorful over time. Due to the cost and difficulty associated with …

Modeling epistasis in genomic selection

Y Jiang, JC Reif - Genetics, 2015 - academic.oup.com
Modeling epistasis in genomic selection is impeded by a high computational load. The
extended genomic best linear unbiased prediction (EG-BLUP) with an epistatic relationship …

Genomic prediction contributing to a promising global strategy to turbocharge gene banks

X Yu, X Li, T Guo, C Zhu, Y Wu, SE Mitchell… - Nature plants, 2016 - nature.com
The 7.4 million plant accessions in gene banks are largely underutilized due to various
resource constraints, but current genomic and analytic technologies are enabling us to mine …

Non-additive effects in genomic selection

L Varona, A Legarra, MA Toro, ZG Vitezica - Frontiers in genetics, 2018 - frontiersin.org
In the last decade, genomic selection has become a standard in the genetic evaluation of
livestock populations. However, most procedures for the implementation of genomic …

Genomic and environmental determinants and their interplay underlying phenotypic plasticity

X Li, T Guo, Q Mu, X Li, J Yu - Proceedings of the National …, 2018 - National Acad Sciences
Observed phenotypic variation in living organisms is shaped by genomes, environment, and
their interactions. Flowering time under natural conditions can showcase the diverse …

Machine learning for predicting phenotype from genotype and environment

T Guo, X Li - Current Opinion in Biotechnology, 2023 - Elsevier
Predicting phenotype with genomic and environmental information is critically needed and
challenging. Machine learning methods have emerged as powerful tools to make accurate …

Nonlinear kernels, dominance, and envirotyping data increase the accuracy of genome-based prediction in multi-environment trials

G Costa-Neto, R Fritsche-Neto, J Crossa - Heredity, 2021 - nature.com
Modern whole-genome prediction (WGP) frameworks that focus on multi-environment trials
(MET) integrate large-scale genomics, phenomics, and envirotyping data. However, the …

Genomic selection in a commercial winter wheat population

S He, AW Schulthess, V Mirdita, Y Zhao… - Theoretical and Applied …, 2016 - Springer
Key message Genomic selection models can be trained using historical data and filtering
genotypes based on phenotyping intensity and reliability criterion are able to increase the …