Xenobiotic metabolism and transport in Caenorhabditis elegans

JH Hartman, SJ Widmayer… - Journal of Toxicology …, 2021 - Taylor & Francis
Caenorhabditis elegans has emerged as a major model in biomedical and environmental
toxicology. Numerous papers on toxicology and pharmacology in C. elegans have been …

JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles

I Rauluseviciute, R Riudavets-Puig… - Nucleic Acids …, 2024 - academic.oup.com
Abstract JASPAR (https://jaspar. elixir. no/) is a widely-used open-access database
presenting manually curated high-quality and non-redundant DNA-binding profiles for …

Single-cell genomics in plants: current state, future directions, and hurdles to overcome

JT Cuperus - Plant Physiology, 2022 - academic.oup.com
Single-cell genomics has the potential to revolutionize the study of plant development and
tissue-specific responses to environmental stimuli by revealing heretofore unknown players …

[HTML][HTML] Molecular topography of an entire nervous system

SR Taylor, G Santpere, A Weinreb, A Barrett, MB Reilly… - Cell, 2021 - cell.com
We have produced gene expression profiles of all 302 neurons of the C. elegans nervous
system that match the single-cell resolution of its anatomy and wiring diagram. Our results …

Unique homeobox codes delineate all the neuron classes of C. elegans

MB Reilly, C Cros, E Varol, E Yemini, O Hobert - Nature, 2020 - nature.com
It is not known at present whether neuronal cell-type diversity—defined by cell-type-specific
anatomical, biophysical, functional and molecular signatures—can be reduced to relatively …

Transcriptome analysis of adult Caenorhabditis elegans cells reveals tissue-specific gene and isoform expression

R Kaletsky, V Yao, A Williams, AM Runnels… - PLoS …, 2018 - journals.plos.org
The biology and behavior of adults differ substantially from those of developing animals, and
cell-specific information is critical for deciphering the biology of multicellular animals. Thus …

Caenorhabditis elegans methionine/S-adenosylmethionine cycle activity is sensed and adjusted by a nuclear hormone receptor

GE Giese, MD Walker, O Ponomarova, H Zhang, X Li… - Elife, 2020 - elifesciences.org
Vitamin B12 is an essential micronutrient that functions in two metabolic pathways: the
canonical propionate breakdown pathway and the methionine/S-adenosylmethionine …

Global landscape of mouse and human cytokine transcriptional regulation

S Carrasco Pro, A Dafonte Imedio… - Nucleic Acids …, 2018 - academic.oup.com
Cytokines are cell-to-cell signaling proteins that play a central role in immune development,
pathogen responses, and diseases. Cytokines are highly regulated at the transcriptional …

[HTML][HTML] A persistence detector for metabolic network rewiring in an animal

JT Bulcha, GE Giese, MZ Ali, YU Lee, MD Walker… - Cell reports, 2019 - cell.com
Biological systems must possess mechanisms that prevent inappropriate responses to
spurious environmental inputs. Caenorhabditis elegans has two breakdown pathways for …

A universal transcriptomic signature of age reveals the temporal scaling of Caenorhabditis elegans aging trajectories

AE Tarkhov, R Alla, S Ayyadevara, M Pyatnitskiy… - Scientific reports, 2019 - nature.com
We collected 60 age-dependent transcriptomes for C. elegans strains including four
exceptionally long-lived mutants (mean adult lifespan extended 2.2-to 9.4-fold) and three …