Landscape of next-generation sequencing technologies
TP Niedringhaus, D Milanova, MB Kerby… - Analytical …, 2011 - ACS Publications
DNA sequencing is in the throes of an enormous technolog-ical shift marked by dramatic
throughput increases, a precipitously dropping per-base cost of raw sequence, and an …
throughput increases, a precipitously dropping per-base cost of raw sequence, and an …
Technological advances in maize breeding: past, present and future
Maize has for many decades been both one of the most important crops worldwide and one
of the primary genetic model organisms. More recently, maize breeding has been impacted …
of the primary genetic model organisms. More recently, maize breeding has been impacted …
Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing
Zea mays is an important genetic model for elucidating transcriptional networks.
Uncertainties about the complete structure of mRNA transcripts limit the progress of research …
Uncertainties about the complete structure of mRNA transcripts limit the progress of research …
Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)
Abstract We report the∼ 2.66-Gb genome sequence of a female Yunnan black goat. The
sequence was obtained by combining short-read sequencing data and optical mapping data …
sequence was obtained by combining short-read sequencing data and optical mapping data …
A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome
MW Ganal, G Durstewitz, A Polley, A Bérard… - PloS one, 2011 - journals.plos.org
SNP genotyping arrays have been useful for many applications that require a large number
of molecular markers such as high-density genetic mapping, genome-wide association …
of molecular markers such as high-density genetic mapping, genome-wide association …
Improved maize reference genome with single-molecule technologies
Complete and accurate reference genomes and annotations provide fundamental tools for
characterization of genetic and functional variation. These resources facilitate the …
characterization of genetic and functional variation. These resources facilitate the …
Genome-wide analysis of bZIP-encoding genes in maize
K Wei, J Chen, Y Wang, Y Chen, S Chen, Y Lin… - DNA …, 2012 - academic.oup.com
In plants, basic leucine zipper (bZIP) proteins regulate numerous biological processes such
as seed maturation, flower and vascular development, stress signalling and pathogen …
as seed maturation, flower and vascular development, stress signalling and pathogen …
Evolutionarily informed deep learning methods for predicting relative transcript abundance from DNA sequence
JD Washburn, MK Mejia-Guerra… - Proceedings of the …, 2019 - National Acad Sciences
Deep learning methodologies have revolutionized prediction in many fields and show
potential to do the same in molecular biology and genetics. However, applying these …
potential to do the same in molecular biology and genetics. However, applying these …
Epigenetic activation of meiotic recombination near Arabidopsis thaliana centromeres via loss of H3K9me2 and non-CG DNA methylation
Eukaryotic centromeres contain the kinetochore, which connects chromosomes to the
spindle allowing segregation. During meiosis, centromeres are suppressed for inter …
spindle allowing segregation. During meiosis, centromeres are suppressed for inter …
Molecular phylogenetic and expression analysis of the complete WRKY transcription factor family in maize
KF Wei, J Chen, YF Chen, LJ Wu, DX Xie - DNA research, 2012 - academic.oup.com
The WRKY transcription factors function in plant growth and development, and response to
the biotic and abiotic stresses. Although many studies have focused on the functional …
the biotic and abiotic stresses. Although many studies have focused on the functional …