Despite the considerable progress made in recent years, the computation of the complete
set of elementary flux modes of large or even genome-scale metabolic networks is still …

Assimilatory and dissimilatory utilisation of autotroph biomass by heterotrophs is a
fundamental mechanism for the transfer of nutrients and energy across trophic levels …

Minimal cut sets are a valuable tool for analyzing metabolic networks and for identifying
optimal gene intervention strategies by eliminating unwanted metabolic functions and …

Abstract Elementary Flux Modes (EFMs) can be used to characterize functional cellular
networks and have gained importance in systems biology. Enumeration of EFMs is a …

the objective of the study was to identify genes and proteins that are involved in the control
of muscle fat deposition in rainbow trout. we analyzed the combined effects exerted by …

Metabolic pathway analysis is a key method to study a metabolism in its steady state, and
the concept of elementary fluxes (EFs) plays a major role in the analysis of a network in …

La thèse s' intéresse à l'application et l'extension des méthodes SAT et SMT pour la biologie
des systèmes. Plus particulièrement sont visées les problématiques issues de l'étude des …

All life requires the acquisition and transformation of nutrients and energy, driving processes
from cellular nutrient flow to planetary biogeochemical cycling. However, the organisms and …

In recent year, amount of biological data has rapidly increased due to highthroughput
experiments on living organisms. This fact leads to the emerging trend towards studying and …

Nowadays, systems biology are facing the challenges of analysing the huge amount of
biological data and large-scale metabolic networks. Although several methods have been …