Pathway and network analysis of cancer genomes

Nature methods, 2015 - nature.com
Genomic information on tumors from 50 cancer types cataloged by the International Cancer
Genome Consortium (ICGC) shows that only a few well-studied driver genes are frequently …

Capturing complex 3D tissue physiology in vitro

LG Griffith, MA Swartz - Nature reviews Molecular cell biology, 2006 - nature.com
The emergence of tissue engineering raises new possibilities for the study of complex
physiological and pathophysiological processes in vitro. Many tools are now available to …

Protein corona fingerprinting predicts the cellular interaction of gold and silver nanoparticles

CD Walkey, JB Olsen, F Song, R Liu, H Guo… - ACS …, 2014 - ACS Publications
Using quantitative models to predict the biological interactions of nanoparticles will
accelerate the translation of nanotechnology. Here, we characterized the serum protein …

Oncogenic KRAS regulates tumor cell signaling via stromal reciprocation

CJ Tape, S Ling, M Dimitriadi, KM McMahon… - Cell, 2016 - cell.com
Oncogenic mutations regulate signaling within both tumor cells and adjacent stromal cells.
Here, we show that oncogenic KRAS (KRAS G12D) also regulates tumor cell signaling via …

Ultrasound-triggered disruption and self-healing of reversibly cross-linked hydrogels for drug delivery and enhanced chemotherapy

N Huebsch, CJ Kearney, X Zhao… - Proceedings of the …, 2014 - National Acad Sciences
Biological systems are exquisitely sensitive to the location and timing of physiologic cues
and drugs. This spatiotemporal sensitivity presents opportunities for developing new …

[HTML][HTML] Sequential application of anticancer drugs enhances cell death by rewiring apoptotic signaling networks

MJ Lee, SY Albert, AK Gardino, AM Heijink, PK Sorger… - Cell, 2012 - cell.com
Crosstalk and complexity within signaling pathways and their perturbation by oncogenes
limit component-by-component approaches to understanding human disease. Network …

Metabolic phenotypes of response to vaccination in humans

S Li, NL Sullivan, N Rouphael, T Yu, S Banton… - Cell, 2017 - cell.com
Herpes zoster (shingles) causes significant morbidity in immune compromised hosts and
older adults. Whereas a vaccine is available for prevention of shingles, its efficacy declines …

[图书][B] An introduction to systems biology: design principles of biological circuits

U Alon - 2019 - api.taylorfrancis.com
Praise for the first edition:… superb, beautifully written and organized work that takes an
engineering approach to systems biology. Alon provides nicely written appendices to …

KinomeXplorer: an integrated platform for kinome biology studies

H Horn, EM Schoof, J Kim, X Robin, ML Miller… - Nature …, 2014 - nature.com
To the Editor: The generation of large-scale phosphoproteomics data sets to elucidate the
phosphorylation events associated with a given phenotype or disease condition has …

Molecular and cellular paradigms of multidrug resistance in cancer

FU Vaidya, A Sufiyan Chhipa, V Mishra… - Cancer …, 2022 - Wiley Online Library
Background The acquisition of resistance to chemotherapy is a major hurdle in the
successful application of cancer therapy. Several anticancer approaches, including …