Deep learning and single-cell phenotyping for rapid antimicrobial susceptibility detection in Escherichia coli
The rise of antimicrobial resistance (AMR) is one of the greatest public health challenges,
already causing up to 1.2 million deaths annually and rising. Current culture-based …
already causing up to 1.2 million deaths annually and rising. Current culture-based …
Impact of wet-lab protocols on quality of whole-genome short-read sequences from foodborne microbial pathogens
LF Forth, E Brinks, G Denay, A Fawzy… - Frontiers in …, 2023 - frontiersin.org
For successful elucidation of a food-borne infection chain, the availability of high-quality
sequencing data from suspected microbial contaminants is a prerequisite. Commonly, those …
sequencing data from suspected microbial contaminants is a prerequisite. Commonly, those …
Whole genome sequencing applied to pathogen source tracking in food industry: key considerations for robust bioinformatics data analysis and reliable results …
C Barretto, C Rincón, AC Portmann, C Ngom-Bru - Genes, 2021 - mdpi.com
Whole genome sequencing (WGS) has arisen as a powerful tool to perform pathogen
source tracking in the food industry thanks to several developments in recent years …
source tracking in the food industry thanks to several developments in recent years …
Bioinformatic investigation of discordant sequence data for SARS-CoV-2: insights for robust genomic analysis during pandemic surveillance
SE Zufan, KA Lau, A Donald, T Hoang… - Microbial …, 2023 - microbiologyresearch.org
The COVID-19 pandemic has necessitated the rapid development and implementation of
whole-genome sequencing (WGS) and bioinformatic methods for managing the pandemic …
whole-genome sequencing (WGS) and bioinformatic methods for managing the pandemic …
From Investigating a Case of Cellulitis to Exploring Nosocomial Infection Control of ST1 Legionella pneumophila Using Genomic Approaches
C Michel, F Echahidi, S Place, L Filippin, V Colombie… - Microorganisms, 2024 - mdpi.com
Legionella pneumophila can cause a large panel of symptoms besides the classic
pneumonia presentation. Here we present a case of fatal nosocomial cellulitis in an …
pneumonia presentation. Here we present a case of fatal nosocomial cellulitis in an …
Ribosome Phenotypes Enable Rapid Antibiotic Susceptibility Testing in Escherichia coli
Rapid antibiotic susceptibility tests (ASTs) are an increasingly important part of clinical care
as antimicrobial resistance (AMR) becomes more common in bacterial infections. Here, we …
as antimicrobial resistance (AMR) becomes more common in bacterial infections. Here, we …
[PDF][PDF] Overview of quality control and safety in public health pest laboratory in Jeddah, Saudi Arabia
SM Elkhalifa, NM Altilmisani, F Albishri… - International Journal of …, 2024 - ijagbio.com
Quality and safety control at the Public Health Pests Laboratory (PHPL) in Jeddah, Saudi
Arabia, has received great attention as part of the ongoing endeavors to protect workers and …
Arabia, has received great attention as part of the ongoing endeavors to protect workers and …
Klebsiella, Enterobacter, Citrobacter, and Selected Other Enterobacteriaceae
S Das, VM Pierce, KM Frank - ClinMicroNow, 2024 - Wiley Online Library
Abstract The genera Klebsiella, Enterobacter, Citrobacter, and Cronobacter are commonly
encountered in clinical laboratories and cause a range of infections in humans, including …
encountered in clinical laboratories and cause a range of infections in humans, including …
[PDF][PDF] Near patient pathogen sequencing
CB de Villiers, L Blackburn, H Carr, J Janus, M Kroese… - 2022 - finddx.org
Pathogen genome sequencing is used in the management of infectious diseases,
supporting diagnosis, treatment decisions, outbreak management, surveillance and …
supporting diagnosis, treatment decisions, outbreak management, surveillance and …