The A12. 2 subunit plays an integral role in pyrophosphate release of RNA Polymerase I

KB Fuller, RQ Jacobs, DA Schneider… - Journal of Molecular …, 2023 - Elsevier
Abstract RNA polymerase I (Pol I) synthesizes ribosomal RNA (rRNA), which is the first and
rate-limiting step in ribosome biosynthesis. A12. 2 (A12) is a critical subunit of Pol I that is …

Transcription elongation mechanisms of RNA polymerases I, II, and III and their therapeutic implications

RQ Jacobs, DA Schneider - Journal of Biological Chemistry, 2024 - ASBMB
Transcription is a tightly regulated, complex, and essential cellular process in all living
organisms. Transcription is comprised of three steps, transcription initiation, elongation, and …

[HTML][HTML] Protocol for monitoring and analyzing single nucleotide incorporation by S. cerevisiae RNA polymerases

RQ Jacobs, NF Bellis, AL Lucius, DA Schneider - STAR protocols, 2023 - Elsevier
Here we present an optimized protocol for monitoring and analyzing single nucleotide
incorporation by RNA polymerases. This protocol describes the assembly of Saccharomyces …

NTPs compete in the active site of RNA polymerases I and II

KB Fuller, RM Requijo, DA Schneider, AL Lucius - Biophysical Chemistry, 2024 - Elsevier
Eukaryotes express at least three RNA polymerases (Pols) carry out transcription, while
bacteria and archaea use only one. Using transient state kinetics, we have extensively …

Reversible Kinetics in Multi-nucleotide Addition Catalyzed by S. cerevisiae RNA polymerase II Reveal Slow Pyrophosphate Release

KB Fuller, RQ Jacobs, DA Schneider… - Journal of Molecular …, 2024 - Elsevier
Eukaryotes express at least three nuclear DNA dependent RNA polymerases (Pols). Pols I,
II, and III synthesize ribosomal (r) RNA, messenger (m) RNA, and transfer (t) RNA …

Hi gh-throughput K inetics using capillary E lectrophoresis and R obotics (HiKER) platform used to study T7, T3, and Sp6 RNA polymerase misincorporation

ZI Carter, WB O'Brien, S Lund, AF Gardner - PloS one, 2024 - journals.plos.org
T7 RNA Polymerase (RNAP) is a widely used enzyme with recent applications in the
production of RNA vaccines. For over 50 years denaturing sequencing gels have been used …

Biochemical characterization of Mycobacterial RNA polymerases

SL Cooper, RM Requijo, AL Lucius… - Journal of …, 2024 - journals.asm.org
Tuberculosis is caused by the bacterium Mycobacterium tuberculosis (Mtb). While eukaryotic
species employ several specialized RNA polymerases (Pols) to fulfill the RNA synthesis …

Global kinetic mechanism describing single nucleotide incorporation for RNA polymerase I reveals fast UMP incorporation

KB Fuller, RQ Jacobs, ZI Carter, ZG Cuny… - Biophysical …, 2024 - Elsevier
Abstract RNA polymerase I (Pol I) is responsible for synthesizing ribosomal RNA, which is
the rate limiting step in ribosome biogenesis. We have reported wide variability in the …

Quantifying the impact of initial RNA primer length on nucleotide addition by RNA polymerase I

SL Cooper, AL Lucius, DA Schneider - Biophysical Chemistry, 2024 - Elsevier
Transient state kinetic studies of eukaryotic DNA-dependent RNA polymerases (Pols) in vitro
provide quantitative characterization of enzyme activity at the level of individual nucleotide …

Evidence for Stepwise Disruption of E. coli RNA Polymerase-λR Promoter Contacts and Bubble Collapse in Transcription Initiation

MJ Rector, R Li, HC Wang, MT Record Jr - bioRxiv, 2024 - biorxiv.org
In transcription initiation by E. coli RNA polymerase (RNAP), translocation of the RNA-DNA
hybrid disrupts RNAP-promoter and σ70-core RNAP contacts, releasing σ70 and allowing …