RNA‐protein interactions in an unstructured context
B Zagrovic, L Bartonek, AA Polyansky - FEBS letters, 2018 - Wiley Online Library
Despite their importance, our understanding of noncovalent RNA–protein interactions is
incomplete. This especially concerns the binding between RNA and unstructured protein …
incomplete. This especially concerns the binding between RNA and unstructured protein …
[HTML][HTML] Computational prediction of RNA-binding proteins and binding sites
J Si, J Cui, J Cheng, R Wu - International journal of molecular sciences, 2015 - mdpi.com
Proteins and RNA interaction have vital roles in many cellular processes such as protein
synthesis, sequence encoding, RNA transfer, and gene regulation at the transcriptional and …
synthesis, sequence encoding, RNA transfer, and gene regulation at the transcriptional and …
NPDock: a web server for protein–nucleic acid docking
Protein–RNA and protein–DNA interactions play fundamental roles in many biological
processes. A detailed understanding of these interactions requires knowledge about protein …
processes. A detailed understanding of these interactions requires knowledge about protein …
A knowledge-based scoring function for protein-RNA interactions derived from a statistical mechanics-based iterative method
SY Huang, X Zou - Nucleic acids research, 2014 - academic.oup.com
Protein-RNA interactions play important roles in many biological processes. Given the high
cost and technique difficulties in experimental methods, computationally predicting the …
cost and technique difficulties in experimental methods, computationally predicting the …
Assessing the performance of MM/PBSA and MM/GBSA methods. 8. Predicting binding free energies and poses of protein–RNA complexes
Molecular docking provides a computationally efficient way to predict the atomic structural
details of protein–RNA interactions (PRI), but accurate prediction of the three-dimensional …
details of protein–RNA interactions (PRI), but accurate prediction of the three-dimensional …
[HTML][HTML] Evaluating native-like structures of RNA-protein complexes through the deep learning method
RNA-protein complexes underlie numerous cellular processes, including basic translation
and gene regulation. The high-resolution structure determination of the RNA-protein …
and gene regulation. The high-resolution structure determination of the RNA-protein …
[HTML][HTML] Hypoxia-induced exosomal circPDK1 promotes pancreatic cancer glycolysis via c-myc activation by modulating miR-628-3p/BPTF axis and degrading BIN1
J Lin, X Wang, S Zhai, M Shi, C Peng, X Deng… - Journal of Hematology & …, 2022 - Springer
Background circRNA has been established to play a pivotal role in tumorigenesis
development in a variety of cancers; nevertheless, the biological functions and molecular …
development in a variety of cancers; nevertheless, the biological functions and molecular …
Protein–RNA interactions: structural characteristics and hotspot amino acids
DM Krüger, S Neubacher, TN Grossmann - Rna, 2018 - rnajournal.cshlp.org
Structural information about protein–RNA complexes supports the understanding of crucial
recognition processes in the cell, and it can allow the development of high affinity ligands to …
recognition processes in the cell, and it can allow the development of high affinity ligands to …
Computational methods for prediction of protein–RNA interactions
T Puton, L Kozlowski, I Tuszynska, K Rother… - Journal of structural …, 2012 - Elsevier
Understanding the molecular mechanism of protein–RNA recognition and complex
formation is a major challenge in structural biology. Unfortunately, the experimental …
formation is a major challenge in structural biology. Unfortunately, the experimental …
LigandRNA: computational predictor of RNA–ligand interactions
RNA molecules have recently become attractive as potential drug targets due to the
increased awareness of their importance in key biological processes. The increase of the …
increased awareness of their importance in key biological processes. The increase of the …