Recent advances in molecular techniques to study microbial communities in food-associated matrices and processes

A Justé, B Thomma, B Lievens - Food microbiology, 2008 - Elsevier
In the last two decades major changes have occurred in how microbial ecologists study
microbial communities. Limitations associated with traditional culture-based methods have …

An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data

D Ramsköld, ET Wang, CB Burge… - PLoS computational …, 2009 - journals.plos.org
The parts of the genome transcribed by a cell or tissue reflect the biological processes and
functions it carries out. We characterized the features of mammalian tissue transcriptomes at …

What to compare and how: comparative transcriptomics for evo‐devo

J Roux, M Rosikiewicz… - Journal of Experimental …, 2015 - Wiley Online Library
Evolutionary developmental biology has grown historically from the capacity to relate
patterns of evolution in anatomy to patterns of evolution of expression of specific genes …

Divergence of human and mouse brain transcriptome highlights Alzheimer disease pathways

JA Miller, S Horvath… - Proceedings of the …, 2010 - National Acad Sciences
Because mouse models play a crucial role in biomedical research related to the human
nervous system, understanding the similarities and differences between mouse and human …

Tempo and mode of regulatory evolution in Drosophila

JD Coolon, CJ McManus, KR Stevenson… - Genome …, 2014 - genome.cshlp.org
Genetic changes affecting gene expression contribute to phenotypic divergence; thus,
understanding how regulatory networks controlling gene expression change over time is …

Null mutations in human and mouse orthologs frequently result in different phenotypes

BY Liao, J Zhang - Proceedings of the National Academy of …, 2008 - National Acad Sciences
One-to-one orthologous genes of relatively closely related species are widely assumed to
have similar functions and cause similar phenotypes when deleted from the genome …

The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes

MN McCall, K Uppal, HA Jaffee, MJ Zilliox… - Nucleic acids …, 2011 - academic.oup.com
Various databases have harnessed the wealth of publicly available microarray data to
address biological questions ranging from across-tissue differential expression to …

Application of transcriptional benchmark dose values in quantitative cancer and noncancer risk assessment

RS Thomas, HJ Clewell III, BC Allen… - Toxicological …, 2011 - academic.oup.com
The traditional approach for estimating noncancer and cancer reference values in
quantitative chemical risk assessment is time and resource intensive. The extent and nature …

Large scale comparison of global gene expression patterns in human and mouse

X Zheng-Bradley, J Rung, H Parkinson, A Brazma - Genome biology, 2010 - Springer
Background It is widely accepted that orthologous genes between species are conserved at
the sequence level and perform similar functions in different organisms. However, the level …

Genome-wide identification, evolutionary and expression analysis of the aspartic protease gene superfamily in grape

R Guo, X Xu, B Carole, X Li, M Gao, Y Zheng, X Wang - BMC genomics, 2013 - Springer
Abstract Background Aspartic proteases (APs) are a large family of proteolytic enzymes
found in almost all organisms. In plants, they are involved in many biological processes …