The neuroimmune response during stress: A physiological perspective

H Haykin, A Rolls - Immunity, 2021 - cell.com
Stress is an essential adaptive response that enables the organism to cope with challenges
and restore homeostasis. Different stressors require distinctive corrective responses in …

Neuroimmune mechanisms of opioid use disorder and recovery: Translatability to human studies, and future research directions

ER Butelman, RZ Goldstein, CA Nwaneshiudu… - Neuroscience, 2023 - Elsevier
Opioid use disorder (OUD) is a major current cause of morbidity and mortality. Long-term
exposure to short-acting opioids (MOP-r agonists such as heroin or fentanyl) results in …

Interfacing Seurat with the R tidy universe

S Mangiola, MA Doyle, AT Papenfuss - Bioinformatics, 2021 - academic.oup.com
Motivation Seurat is one of the most popular software suites for the analysis of single-cell
RNA sequencing data. Considering the popularity of the tidyverse ecosystem, which offers a …

Fast and precise single-cell data analysis using a hierarchical autoencoder

D Tran, H Nguyen, B Tran, C La Vecchia… - Nature …, 2021 - nature.com
A primary challenge in single-cell RNA sequencing (scRNA-seq) studies comes from the
massive amount of data and the excess noise level. To address this challenge, we introduce …

sccomp: Robust differential composition and variability analysis for single-cell data

S Mangiola, AJ Roth-Schulze… - Proceedings of the …, 2023 - National Acad Sciences
Cellular omics such as single-cell genomics, proteomics, and microbiomics allow the
characterization of tissue and microbial community composition, which can be compared …

Scalable querying of human cell atlases via a foundational model reveals commonalities across fibrosis-associated macrophages

G Heimberg, T Kuo, D DePianto, T Heigl, N Diamant… - BioRxiv, 2023 - biorxiv.org
Single-cell RNA-seq (scRNA-seq) studies have profiled over 100 million human cells across
diseases, developmental stages, and perturbations to date. A singular view of this vast and …

Endogenous opiates and behavior: 2022

RJ Bodnar - Peptides, 2023 - Elsevier
This paper is the forty-fifth consecutive installment of the annual anthological review of
research concerning the endogenous opioid system, summarizing articles published during …

Single cell transcriptomics reveals distinct transcriptional responses to oxycodone and buprenorphine by iPSC-derived brain organoids from patients with opioid use …

MF Ho, C Zhang, I Moon, X Zhu, BJ Coombes… - Molecular …, 2024 - nature.com
The opioid epidemic represents a national crisis. Oxycodone is one of the most prescribed
opioid medications in the United States, whereas buprenorphine is currently the most …

Immunosuppression by opioids: mechanisms of action on innate and adaptive immunity

Q Sun, Z Li, Z Wang, Q Wang, F Qin, H Pan… - Biochemical …, 2023 - Elsevier
Opioids are excellent analgesics for the clinical treatment of various types of acute and
chronic pain, particularly cancer-related pain. Nevertheless, it is well known that opioids …

Virally suppressed people living with HIV who use opioids have diminished latency reversal

B Basukala, S Rossi, S Bendiks, N Gnatienko, G Patts… - Viruses, 2023 - mdpi.com
Of the 12 million people who inject drugs worldwide, 13% live with HIV. Whether opioid use
impacts HIV pathogenesis and latency is an outstanding question. To gain insight into …