Single-cell proteomics enabled by next-generation sequencing or mass spectrometry
In the last decade, single-cell RNA sequencing routinely performed on large numbers of
single cells has greatly advanced our understanding of the underlying heterogeneity of …
single cells has greatly advanced our understanding of the underlying heterogeneity of …
[HTML][HTML] High-throughput proteomics: a methodological mini-review
Proteomics plays a vital role in biomedical research in the post-genomic era. With the
technological revolution and emerging computational and statistic models, proteomic …
technological revolution and emerging computational and statistic models, proteomic …
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments
Analyzing proteins from single cells by tandem mass spectrometry (MS) has recently
become technically feasible. While such analysis has the potential to accurately quantify …
become technically feasible. While such analysis has the potential to accurately quantify …
Exploration of cell state heterogeneity using single-cell proteomics through sensitivity-tailored data-independent acquisition
V Petrosius, P Aragon-Fernandez, N Üresin… - Nature …, 2023 - nature.com
Single-cell resolution analysis of complex biological tissues is fundamental to capture cell-
state heterogeneity and distinct cellular signaling patterns that remain obscured with …
state heterogeneity and distinct cellular signaling patterns that remain obscured with …
Increasing the throughput of sensitive proteomics by plexDIA
Current mass spectrometry methods enable high-throughput proteomics of large sample
amounts, but proteomics of low sample amounts remains limited in depth and throughput. To …
amounts, but proteomics of low sample amounts remains limited in depth and throughput. To …
Prioritized mass spectrometry increases the depth, sensitivity and data completeness of single-cell proteomics
Major aims of single-cell proteomics include increasing the consistency, sensitivity and
depth of protein quantification, especially for proteins and modifications of biological interest …
depth of protein quantification, especially for proteins and modifications of biological interest …
Sampling the proteome by emerging single-molecule and mass spectrometry methods
MJ MacCoss, JA Alfaro, DA Faivre, CC Wu… - nature methods, 2023 - nature.com
Mammalian cells have about 30,000 times as many protein molecules as mRNA molecules,
which has major implications in the development of proteomics technologies. We discuss …
which has major implications in the development of proteomics technologies. We discuss …
[HTML][HTML] Pan-cancer proteogenomics connects oncogenic drivers to functional states
Cancer driver events refer to key genetic aberrations that drive oncogenesis; however, their
exact molecular mechanisms remain insufficiently understood. Here, our multi-omics pan …
exact molecular mechanisms remain insufficiently understood. Here, our multi-omics pan …
High-end ion mobility mass spectrometry: A current review of analytical capacity in omics applications and structural investigations
Mass spectrometry-based biomolecular analyses have become permanent fixtures of
academic, industrial, and clinical research settings. The rise in utilization of mass …
academic, industrial, and clinical research settings. The rise in utilization of mass …
Exploring functional protein covariation across single cells using nPOP
Background Many biological processes, such as cell division cycle and drug resistance, are
reflected in protein covariation across single cells. This covariation can be quantified and …
reflected in protein covariation across single cells. This covariation can be quantified and …