Transcription shapes 3D chromatin organization by interacting with loop extrusion

EJ Banigan, W Tang… - Proceedings of the …, 2023 - National Acad Sciences
Cohesin folds mammalian interphase chromosomes by extruding the chromatin fiber into
numerous loops.“Loop extrusion” can be impeded by chromatin-bound factors, such as …

Transcription regulates the spatio-temporal dynamics of genes through micro-compartmentalization

H Salari, G Fourel, D Jost - Nature Communications, 2024 - nature.com
Although our understanding of the involvement of heterochromatin architectural factors in
shaping nuclear organization is improving, there is still ongoing debate regarding the role of …

Transcription induces context-dependent remodeling of chromatin architecture during differentiation

S Chahar, Y Ben Zouari, H Salari, D Kobi… - Plos …, 2023 - journals.plos.org
Metazoan chromosomes are organized into discrete spatial domains (TADs), believed to
contribute to the regulation of transcriptional programs. Despite extensive correlation …

Cohesin forms fountains at active enhancers in C. elegans

B Isiaka, J Semple, A Haemmerli, S Thapliyal… - bioRxiv, 2023 - biorxiv.org
Transcriptional enhancers must find their target genes both efficiently and specifically.
Chromatin conformation capture revealed the critical function of three-dimensional …

The TFIIH complex is required to establish and maintain mitotic chromosome structure

J Haase, R Chen, WM Parker, MK Bonner, LM Jenkins… - Elife, 2022 - elifesciences.org
Condensins compact chromosomes to promote their equal segregation during mitosis, but
the mechanism of condensin engagement with and action on chromatin is incompletely …

RNAP II antagonizes mitotic chromatin folding and chromosome segregation by condensin

J Lebreton, L Colin, E Chatre, P Bernard - Cell Reports, 2024 - cell.com
Condensin shapes mitotic chromosomes by folding chromatin into loops, but whether it does
so by DNA-loop extrusion remains speculative. Although loop-extruding cohesin is stalled …

Condensin positioning at telomeres by shelterin proteins drives sister-telomere disjunction in anaphase

L Colin, C Reyes, J Berthezene, L Maestroni, L Modolo… - Elife, 2023 - elifesciences.org
The localization of condensin along chromosomes is crucial for their accurate segregation in
anaphase. Condensin is enriched at telomeres but how and for what purpose had remained …

Telomere protein arrays stall DNA loop extrusion by condensin

BT Analikwu, A Deshayes, J van der Torre, T Guérin… - bioRxiv, 2023 - biorxiv.org
DNA loop extrusion by SMC proteins is a key process underlying chromosomal
organization. It is unknown how loop extruders interact with telomeres where chromosome …

Context-dependent transcriptional remodeling of TADs during differentiation

S Chahar, YB Zouari, H Salari, AM Molitor, D Kobi… - bioRxiv, 2022 - biorxiv.org
Metazoan chromosomes are organized into discrete domains (TADs), believed to contribute
to the regulation of transcriptional programs. Despite extensive correlation between TAD …

Fold-change of chromatin condensation in yeast is a conserved property

K Yamin, S Bijlani, J Berman, A Soni, J Shlomai… - Scientific reports, 2022 - nature.com
During mitosis, chromatin is condensed and organized into mitotic chromosomes.
Condensation is critical for genome stability and dynamics, yet the degree of condensation …