De novo mutations in human genetic disease

JA Veltman, HG Brunner - Nature Reviews Genetics, 2012 - nature.com
New mutations have long been known to cause genetic disease, but their true contribution to
the disease burden can only now be determined using family-based whole-genome or …

Copy-number variation and association studies of human disease

SA McCarroll, DM Altshuler - Nature genetics, 2007 - nature.com
The central goal of human genetics is to understand the inherited basis of human variation
in phenotypes, elucidating human physiology, evolution and disease. Rare mutations have …

The Database of Genomic Variants: a curated collection of structural variation in the human genome

JR MacDonald, R Ziman, RKC Yuen… - Nucleic acids …, 2014 - academic.oup.com
Over the past decade, the Database of Genomic Variants (DGV; http://dgv. tcag. ca/) has
provided a publicly accessible, comprehensive curated catalogue of structural variation (SV) …

A robust model for read count data in exome sequencing experiments and implications for copy number variant calling

V Plagnol, J Curtis, M Epstein, KY Mok… - …, 2012 - academic.oup.com
Motivation: Exome sequencing has proven to be an effective tool to discover the genetic
basis of Mendelian disorders. It is well established that copy number variants (CNVs) …

Detection of clinically relevant genetic variants in autism spectrum disorder by whole-genome sequencing

Y Jiang, RKC Yuen, X Jin, M Wang, N Chen… - The American Journal of …, 2013 - cell.com
Autism Spectrum Disorder (ASD) demonstrates high heritability and familial clustering, yet
the genetic causes remain only partially understood as a result of extensive clinical and …

Somatic copy number mosaicism in human skin revealed by induced pluripotent stem cells

A Abyzov, J Mariani, D Palejev, Y Zhang, MS Haney… - Nature, 2012 - nature.com
Reprogramming somatic cells into induced pluripotent stem cells (iPSCs) has been
suspected of causing de novo copy number variation,,,. To explore this issue, here we …

Integrated detection and population-genetic analysis of SNPs and copy number variation

SA McCarroll, FG Kuruvilla, JM Korn, S Cawley… - Nature …, 2008 - nature.com
Dissecting the genetic basis of disease risk requires measuring all forms of genetic variation,
including SNPs and copy number variants (CNVs), and is enabled by accurate maps of their …

Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants

D Pinto, K Darvishi, X Shi, D Rajan, D Rigler… - Nature …, 2011 - nature.com
We have systematically compared copy number variant (CNV) detection on eleven
microarrays to evaluate data quality and CNV calling, reproducibility, concordance across …

Update on the aldehyde dehydrogenase gene (ALDH) superfamily

B Jackson, C Brocker, DC Thompson, W Black… - Human genomics, 2011 - Springer
Members of the aldehyde dehydrogenase gene (ALDH) superfamily play an important role
in the enzymic detoxification of endogenous and exogenous aldehydes and in the formation …

[HTML][HTML] ACMG Standards and Guidelines for constitutional cytogenomic microarray analysis, including postnatal and prenatal applications: revision 2013

ST South, C Lee, AN Lamb, AW Higgins… - Genetics in …, 2013 - Elsevier
Microarray methodologies, including array comparative genomic hybridization and single-
nucleotide polymorphism–detecting arrays, are accepted as an appropriate first-tier test for …