Dynamics and function of DNA methylation in plants

H Zhang, Z Lang, JK Zhu - Nature reviews Molecular cell biology, 2018 - nature.com
DNA methylation is a conserved epigenetic modification that is important for gene regulation
and genome stability. Aberrant patterns of DNA methylation can lead to plant developmental …

Gene body DNA methylation in plants

AJ Bewick, RJ Schmitz - Current opinion in plant biology, 2017 - Elsevier
Highlights•GbM is typified by mCG within coding regions, and depletion at the TSS and
TTS.•Species without gbM revealed an unexpected role for CMT3 in the evolution of …

DNA methylation-free Arabidopsis reveals crucial roles of DNA methylation in regulating gene expression and development

L He, H Huang, M Bradai, C Zhao, Y You, J Ma… - Nature …, 2022 - nature.com
A contribution of DNA methylation to defense against invading nucleic acids and
maintenance of genome integrity is uncontested; however, our understanding of the extent …

Site-specific manipulation of Arabidopsis loci using CRISPR-Cas9 SunTag systems

A Papikian, W Liu, J Gallego-Bartolomé… - Nature …, 2019 - nature.com
Understanding genomic functions requires site-specific manipulation of loci via efficient
protein effector targeting systems. However, few approaches for targeted manipulation of the …

An ABCC-type transporter endowing glyphosate resistance in plants

L Pan, Q Yu, J Wang, H Han, L Mao… - Proceedings of the …, 2021 - National Acad Sciences
Glyphosate is the most widely used herbicide in world agriculture and for general vegetation
control in a wide range of situations. Global and often intensive glyphosate selection of very …

The Norway spruce genome sequence and conifer genome evolution

B Nystedt, NR Street, A Wetterbom, A Zuccolo, YC Lin… - Nature, 2013 - nature.com
Conifers have dominated forests for more than 200 million years and are of huge ecological
and economic importance. Here we present the draft assembly of the 20-gigabase genome …

Genome-wide detection of cytosine methylations in plant from Nanopore data using deep learning

P Ni, N Huang, F Nie, J Zhang, Z Zhang, B Wu… - Nature …, 2021 - nature.com
In plants, cytosine DNA methylations (5mCs) can happen in three sequence contexts as
CpG, CHG, and CHH (where H= A, C, or T), which play different roles in the regulation of …

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

JA Law, SE Jacobsen - Nature Reviews Genetics, 2010 - nature.com
Cytosine DNA methylation is a stable epigenetic mark that is crucial for diverse biological
processes, including gene and transposon silencing, imprinting and X chromosome …

Genome-wide evolutionary analysis of eukaryotic DNA methylation

A Zemach, IE McDaniel, P Silva, D Zilberman - Science, 2010 - science.org
Eukaryotic cytosine methylation represses transcription but also occurs in the bodies of
active genes, and the extent of methylation biology conservation is unclear. We quantified …

[HTML][HTML] Origins and mechanisms of miRNAs and siRNAs

RW Carthew, EJ Sontheimer - Cell, 2009 - cell.com
Over the last decade,∼ 20–30 nucleotide RNA molecules have emerged as critical
regulators in the expression and function of eukaryotic genomes. Two primary categories of …