Electrostatic interactions in protein structure, folding, binding, and condensation

HX Zhou, X Pang - Chemical reviews, 2018 - ACS Publications
Charged and polar groups, through forming ion pairs, hydrogen bonds, and other less
specific electrostatic interactions, impart important properties to proteins. Modulation of the …

[HTML][HTML] Advanced fluorescence microscopy techniques—Frap, Flip, Flap, Fret and flim

HC Ishikawa-Ankerhold, R Ankerhold, GPC Drummen - Molecules, 2012 - mdpi.com
Fluorescence microscopy provides an efficient and unique approach to study fixed and
living cells because of its versatility, specificity, and high sensitivity. Fluorescence …

Imaging protein molecules using FRET and FLIM microscopy

H Wallrabe, A Periasamy - Current opinion in biotechnology, 2005 - Elsevier
Förster (or fluorescence) resonance energy transfer (FRET) and fluorescence lifetime
imaging (FLIM) have moved center stage and are increasingly forming part of multifaceted …

Type II restriction endonucleases—a historical perspective and more

A Pingoud, GG Wilson, W Wende - Nucleic acids research, 2014 - academic.oup.com
This article continues the series of Surveys and Summaries on restriction endonucleases
(REases) begun this year in Nucleic Acids Research. Here we discuss 'Type II'REases, the …

Use of plasmon coupling to reveal the dynamics of DNA bending and cleavage by single EcoRV restriction enzymes

BM Reinhard, S Sheikholeslami… - Proceedings of the …, 2007 - National Acad Sciences
Pairs of Au nanoparticles have recently been proposed as “plasmon rulers” based on the
dependence of their light scattering on the interparticle distance. Preliminary work has …

Mutations in DNA methyltransferase (DNMT3A) observed in acute myeloid leukemia patients disrupt processive methylation

C Holz-Schietinger, DM Matje, NO Reich - Journal of Biological Chemistry, 2012 - ASBMB
DNA methylation is a key regulator of gene expression and changes in DNA methylation
occur early in tumorigenesis. Mutations in the de novo DNA methyltransferase gene …

How DNA coiling enhances target localization by proteins

B van den Broek, MA Lomholt… - Proceedings of the …, 2008 - National Acad Sciences
Many genetic processes depend on proteins interacting with specific sequences on DNA.
Despite the large excess of nonspecific DNA in the cell, proteins can locate their targets …

Global DNA compaction in stationary-phase bacteria does not affect transcription

R Janissen, MMA Arens, NN Vtyurina, Z Rivai… - Cell, 2018 - cell.com
In stationary-phase Escherichia coli, Dps (DNA-binding protein from starved cells) is the
most abundant protein component of the nucleoid. Dps compacts DNA into a dense complex …

Förster resonance energy transfer microscopy and spectroscopy for localizing protein–protein interactions in living cells

Y Sun, C Rombola, V Jyothikumar… - Cytometry Part …, 2013 - Wiley Online Library
The fundamental theory of Förster resonance energy transfer (FRET) was established in the
1940s. Its great power was only realized in the past 20 years after different techniques were …

A universal and label-free aptasensor for fluorescent detection of ATP and thrombin based on SYBR Green Idye

L Kong, J Xu, Y Xu, Y Xiang, R Yuan, Y Chai - Biosensors and …, 2013 - Elsevier
A facile and universal aptamer-based label-free approach for selective and sensitive
fluorescence detection of proteins and small biomolecules by using the SYBR Green I (SGI) …