Compendium of specialized metabolite biosynthetic diversity encoded in bacterial genomes
Bacterial specialized metabolites are a proven source of antibiotics and cancer therapies,
but whether we have sampled all the secondary metabolite chemical diversity of cultivated …
but whether we have sampled all the secondary metabolite chemical diversity of cultivated …
Integrated metabolomic–genomic workflows accelerate microbial natural product discovery
The pairing of analytical chemistry with genomic techniques represents a new wave in
natural product chemistry. With an increase in the availability of sequencing and assembly of …
natural product chemistry. With an increase in the availability of sequencing and assembly of …
Microbiome composition modulates secondary metabolism in a multispecies bacterial community
MG Chevrette, CS Thomas, A Hurley… - Proceedings of the …, 2022 - National Acad Sciences
Bacterial secondary metabolites are a major source of antibiotics and other bioactive
compounds. In microbial communities, these molecules can mediate interspecies …
compounds. In microbial communities, these molecules can mediate interspecies …
Type II Polyketide Synthases: A Bioinformatics‐Driven Approach
S Xie, L Zhang - ChemBioChem, 2023 - Wiley Online Library
Bioinformatics has become an indispensable tool for natural products research in the
genomic era. One of the key challenges is to accurately convert sequence data of a …
genomic era. One of the key challenges is to accurately convert sequence data of a …
Biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments
AB Chase, A Bogdanov, AM Demko… - The ISME …, 2023 - academic.oup.com
While the field of microbial biogeography has largely focused on the contributions of abiotic
factors to community patterns, the potential influence of biotic interactions in structuring …
factors to community patterns, the potential influence of biotic interactions in structuring …
Identification of the lipodepsipeptide selethramide encoded in a giant nonribosomal peptide synthetase from a Burkholderia bacterium
SB Romanowski, S Lee, S Kunakom… - Proceedings of the …, 2023 - National Acad Sciences
Bacterial natural products have found many important industrial applications. Yet traditional
discovery pipelines often prioritize individual natural product families despite the presence …
discovery pipelines often prioritize individual natural product families despite the presence …
Connecting metabolome and phenotype: recent advances in functional metabolomics tools for the identification of bioactive natural products
Covering: 1995 to 2023Advances in bioanalytical methods, particularly mass spectrometry,
have provided valuable molecular insights into the mechanisms of life. Non-targeted …
have provided valuable molecular insights into the mechanisms of life. Non-targeted …
Chemophenetic and chemodiversity approaches: new insights on modern study of plant secondary metabolite diversity at different spatiotemporal and organizational …
YJ Ramos, JG Gouvêa-Silva… - Revista Brasileira de …, 2023 - Springer
The study of plant secondary metabolites, now designated as specialized metabolites, is
motivated by multiple scientific objectives, ranging from bioprospecting for bioactive …
motivated by multiple scientific objectives, ranging from bioprospecting for bioactive …
Cheminformatics-Guided Cell-Free Exploration of Peptide Natural Products
JM Pelton, JE Hochuli, PW Sadecki… - Journal of the …, 2024 - ACS Publications
There have been significant advances in the flexibility and power of in vitro cell-free
translation systems. The increasing ability to incorporate noncanonical amino acids and …
translation systems. The increasing ability to incorporate noncanonical amino acids and …
Discovery of fungal onoceroid triterpenoids through domainless enzyme-targeted global genome mining
J Tang, Y Matsuda - Nature Communications, 2024 - nature.com
Genomics-guided methodologies have revolutionized the discovery of natural products.
However, a major challenge in the field of genome mining is determining how to selectively …
However, a major challenge in the field of genome mining is determining how to selectively …