Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes

C Li, D Wickell, LY Kuo, X Chen, B Nie… - Proceedings of the …, 2024 - National Acad Sciences
Homosporous lycophytes (Lycopodiaceae) are a deeply diverged lineage in the plant tree of
life, having split from heterosporous lycophytes (Selaginella and Isoetes)~ 400 Mya …

Phylotranscriptomics illuminates the placement of whole genome duplications and gene retention in ferns

JA Pelosi, EH Kim, WB Barbazuk… - Frontiers in Plant Science, 2022 - frontiersin.org
Ferns are the second largest clade of vascular plants with over 10,000 species, yet the
generation of genomic resources for the group has lagged behind other major clades of …

Biogeography of Beringian fishes after the molecular revolution and into the post-genomics era

MA Campbell, RJ Brown, KM Fraley, DV Politov… - Reviews in Fish Biology …, 2024 - Springer
Significant progress in our knowledge of Beringian biodiversity and in the technologies
available for biodiversity research has been made in the several decades since a …

Expansion and collapse of VEGF diversity in major clades of the animal kingdom

K Rauniyar, H Bokharaie, M Jeltsch - Angiogenesis, 2023 - Springer
Together with the platelet-derived growth factors (PDGFs), the vascular endothelial growth
factors (VEGFs) form the PDGF/VEGF subgroup among cystine knot growth factors. The …

Insights into chromosomal evolution and sex determination of Pseudobagrus ussuriensis (Bagridae, Siluriformes) based on a chromosome-level genome

C Zhu, H Liu, Z Pan, L Cheng, Y Sun, H Wang… - DNA …, 2022 - academic.oup.com
Pseudobagrus ussuriensis is an aquaculture catfish with significant sexual dimorphism. In
this study, a chromosome-level genome with a size of 741.97 Mb was assembled for female …

Using low-coverage whole genome sequencing (genome skimming) to delineate three introgressed species of buffalofish (Ictiobus)

R Literman, AM Windsor, HL Bart Jr, ES Hunter… - Molecular Phylogenetics …, 2023 - Elsevier
Consumption of buffalofish has been sporadically associated with Haff disease-like illnesses
involving sudden onset muscle pain and weakness due to skeletal muscle rhabdomyolysis …

Navigating the CoGe Online Software Suite for Polyploidy Research

VA Albert, TJ Krabbenhoft - Polyploidy: Methods and Protocols, 2023 - Springer
The CoGe software suite at genomevolution. org hosts a number of tools that facilitate
genomic research on plant and animal whole-genome multiplication—polyploidy. SynMap …

Heterochronic shift in gene expression leads to ontogenetic morphological divergence between two closely related polyploid species

PC Searle, DK Shiozawa, RP Evans, JT Hill, A Suli… - Iscience, 2024 - cell.com
Heterochrony—alteration to the rate or timing of development—is an important mechanism
of trait differentiation associated with speciation. Heterochrony may explain the …

A chromosome-level, haplotype-resolved genome assembly and annotation for the Eurasian minnow (Leuciscidae - Phoxinus phoxinus) provide evidence of …

TO Oriowo, I Chrysostomakis, S Martin, S Kukowka… - bioRxiv, 2023 - biorxiv.org
In this study we present an in-depth analysis of the Eurasian Minnow (Phoxinus phoxinus)
genome, highlighting its genetic diversity, structural variations, and evolutionary adaptations …

[HTML][HTML] Improved genome assembly of Chinese sucker (Myxocyprinus asiaticus) provides insights into the identification and characterization of pharyngeal teeth …

X Liu, H Zeng, C Wang, J Bo, X Gan, C Fang… - Water Biology and …, 2022 - Elsevier
Abstract The Chinese sucker, Myxocyprinus asiaticus (M. asiaticus, Catostomidae,
Cypriniformes), is the only living species of Catostomidae in Asia. There are more than 75 …