Genome-wide approaches to studying chromatin modifications
DE Schones, K Zhao - Nature Reviews Genetics, 2008 - nature.com
Over two metres of DNA is packaged into each nucleus in the human body in a manner that
still allows for gene regulation. This remarkable feat is accomplished by the wrapping of …
still allows for gene regulation. This remarkable feat is accomplished by the wrapping of …
Computational intelligence approaches for classification of medical data: State-of-the-art, future challenges and research directions
The explosive growth of data in volume, velocity and diversity that are produced by medical
applications has contributed to abundance of big data. Current solutions for efficient data …
applications has contributed to abundance of big data. Current solutions for efficient data …
iDNA-Methyl: Identifying DNA methylation sites via pseudo trinucleotide composition
Predominantly occurring on cytosine, DNA methylation is a process by which cells can
modify their DNAs to change the expression of gene products. It plays very important roles in …
modify their DNAs to change the expression of gene products. It plays very important roles in …
Cancer DNA methylation: molecular mechanisms and clinical implications
MT McCabe, JC Brandes, PM Vertino - Clinical Cancer Research, 2009 - AACR
DNA methylation plays a crucial role in the regulation of gene expression and chromatin
organization within normal eukaryotic cells. In cancer, however, global patterns of DNA …
organization within normal eukaryotic cells. In cancer, however, global patterns of DNA …
[HTML][HTML] Predicting genome-wide DNA methylation using methylation marks, genomic position, and DNA regulatory elements
Background Recent assays for individual-specific genome-wide DNA methylation profiles
have enabled epigenome-wide association studies to identify specific CpG sites associated …
have enabled epigenome-wide association studies to identify specific CpG sites associated …
[HTML][HTML] Predicting DNA methylation state of CpG dinucleotide using genome topological features and deep networks
The hypo-or hyper-methylation of the human genome is one of the epigenetic features of
leukemia. However, experimental approaches have only determined the methylation state of …
leukemia. However, experimental approaches have only determined the methylation state of …
Prediction of genome-wide DNA methylation in repetitive elements
DNA methylation in repetitive elements (RE) suppresses their mobility and maintains
genomic stability, and decreases in it are frequently observed in tumor and/or surrogate …
genomic stability, and decreases in it are frequently observed in tumor and/or surrogate …
[HTML][HTML] CpG island mapping by epigenome prediction
CpG islands were originally identified by epigenetic and functional properties, namely,
absence of DNA methylation and frequent promoter association. However, this concept was …
absence of DNA methylation and frequent promoter association. However, this concept was …
[HTML][HTML] Epigenetic Reprogramming in Mice and Humans: From Fertilization to Primordial Germ Cell Development
A Singh, DA Rappolee, DM Ruden - Cells, 2023 - mdpi.com
In this review, advances in the understanding of epigenetic reprogramming from fertilization
to the development of primordial germline cells in a mouse and human embryo are …
to the development of primordial germline cells in a mouse and human embryo are …
Computational epigenetics
C Bock, T Lengauer - Bioinformatics, 2008 - academic.oup.com
Epigenetic research aims to understand heritable gene regulation that is not directly
encoded in the DNA sequence. Epigenetic mechanisms such as DNA methylation and …
encoded in the DNA sequence. Epigenetic mechanisms such as DNA methylation and …