Metabolism of non-growing bacteria

M Lempp, P Lubrano, G Bange, H Link - Biological chemistry, 2020 - degruyter.com
A main function of bacterial metabolism is to supply biomass building blocks and energy for
growth. This seems to imply that metabolism is idle in non-growing bacteria. But how …

Engineering robust microorganisms for organic acid production

VG Tran, H Zhao - Journal of Industrial Microbiology and …, 2022 - academic.oup.com
Organic acids are an important class of compounds that can be produced by microbial
conversion of renewable feedstocks and have huge demands and broad applications in …

A multi-scale expression and regulation knowledge base for Escherichia coli

CR Lamoureux, KT Decker, AV Sastry… - Nucleic Acids …, 2023 - academic.oup.com
Transcriptomic data is accumulating rapidly; thus, scalable methods for extracting
knowledge from this data are critical. Here, we assembled a top-down expression and …

Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli

B Du, L Yang, CJ Lloyd, X Fang… - PLoS computational …, 2019 - journals.plos.org
Response to acid stress is critical for Escherichia coli to successfully complete its life-cycle
by passing through the stomach to colonize the digestive tract. To develop a fundamental …

Multitier regulation of the E. coli extreme acid stress response by CsrA

MG Gorelik, H Yakhnin, A Pannuri… - Journal of …, 2024 - Am Soc Microbiol
CsrA is an RNA-binding protein that regulates processes critical for growth and survival,
including central carbon metabolism, motility, biofilm formation, stress responses, and …

Adaptive laboratory evolution of Salmonella enterica in acid stress

M Ghoshal, TD Bechtel, JG Gibbons… - Frontiers in …, 2023 - frontiersin.org
Introduction Adaptive laboratory evolution (ALE) studies play a crucial role in understanding
the adaptation and evolution of different bacterial species. In this study, we have …

The challenges and prospects of Escherichia coli as an organic acid production host under acid stress

J Yang, J Zhang, Z Zhu, G Du - Applied Microbiology and Biotechnology, 2021 - Springer
Objective Organic acids have a wide range of applications and have attracted the attention
of many industries, and their large-scale applications have led fermentation production to …

Application of adaptive laboratory evolution in lipid and terpenoid production in yeast and microalgae

YL Jia, J Li, FT Nong, CX Yan, W Ma, XF Zhu… - ACS Synthetic …, 2023 - ACS Publications
Due to the complexity of metabolic and regulatory networks in microorganisms, it is difficult
to obtain robust phenotypes through artificial rational design and genetic perturbation …

Methods for studying microbial acid stress responses: from molecules to populations

M Atasoy, S Bartkova, Z Çetecioğlu-Gürol… - FEMS Microbiology …, 2024 - academic.oup.com
The study of how micro-organisms detect and respond to different stresses has a long
history of producing fundamental biological insights while being simultaneously of …

Synthetic acid stress-tolerance modules improve growth robustness and lysine productivity of industrial Escherichia coli in fermentation at low pH

X Yao, P Liu, B Chen, X Wang, F Tao, Z Lin… - Microbial Cell …, 2022 - Springer
Background During fermentation, industrial microorganisms encounter multiple stresses that
inhibit cell growth and decrease fermentation yields, in particular acid stress, which is due to …