Metabolism of non-growing bacteria
A main function of bacterial metabolism is to supply biomass building blocks and energy for
growth. This seems to imply that metabolism is idle in non-growing bacteria. But how …
growth. This seems to imply that metabolism is idle in non-growing bacteria. But how …
Engineering robust microorganisms for organic acid production
Organic acids are an important class of compounds that can be produced by microbial
conversion of renewable feedstocks and have huge demands and broad applications in …
conversion of renewable feedstocks and have huge demands and broad applications in …
A multi-scale expression and regulation knowledge base for Escherichia coli
CR Lamoureux, KT Decker, AV Sastry… - Nucleic Acids …, 2023 - academic.oup.com
Transcriptomic data is accumulating rapidly; thus, scalable methods for extracting
knowledge from this data are critical. Here, we assembled a top-down expression and …
knowledge from this data are critical. Here, we assembled a top-down expression and …
Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli
Response to acid stress is critical for Escherichia coli to successfully complete its life-cycle
by passing through the stomach to colonize the digestive tract. To develop a fundamental …
by passing through the stomach to colonize the digestive tract. To develop a fundamental …
Multitier regulation of the E. coli extreme acid stress response by CsrA
MG Gorelik, H Yakhnin, A Pannuri… - Journal of …, 2024 - Am Soc Microbiol
CsrA is an RNA-binding protein that regulates processes critical for growth and survival,
including central carbon metabolism, motility, biofilm formation, stress responses, and …
including central carbon metabolism, motility, biofilm formation, stress responses, and …
Adaptive laboratory evolution of Salmonella enterica in acid stress
Introduction Adaptive laboratory evolution (ALE) studies play a crucial role in understanding
the adaptation and evolution of different bacterial species. In this study, we have …
the adaptation and evolution of different bacterial species. In this study, we have …
The challenges and prospects of Escherichia coli as an organic acid production host under acid stress
J Yang, J Zhang, Z Zhu, G Du - Applied Microbiology and Biotechnology, 2021 - Springer
Objective Organic acids have a wide range of applications and have attracted the attention
of many industries, and their large-scale applications have led fermentation production to …
of many industries, and their large-scale applications have led fermentation production to …
Application of adaptive laboratory evolution in lipid and terpenoid production in yeast and microalgae
YL Jia, J Li, FT Nong, CX Yan, W Ma, XF Zhu… - ACS Synthetic …, 2023 - ACS Publications
Due to the complexity of metabolic and regulatory networks in microorganisms, it is difficult
to obtain robust phenotypes through artificial rational design and genetic perturbation …
to obtain robust phenotypes through artificial rational design and genetic perturbation …
Methods for studying microbial acid stress responses: from molecules to populations
The study of how micro-organisms detect and respond to different stresses has a long
history of producing fundamental biological insights while being simultaneously of …
history of producing fundamental biological insights while being simultaneously of …
Synthetic acid stress-tolerance modules improve growth robustness and lysine productivity of industrial Escherichia coli in fermentation at low pH
Background During fermentation, industrial microorganisms encounter multiple stresses that
inhibit cell growth and decrease fermentation yields, in particular acid stress, which is due to …
inhibit cell growth and decrease fermentation yields, in particular acid stress, which is due to …