Rationally engineered nucleic acid architectures for biosensing applications
Development of biosensing platforms plays a key role in research settings for identification
of biomarkers and in clinical applications for diagnostics. Biosensors based on nucleic acids …
of biomarkers and in clinical applications for diagnostics. Biosensors based on nucleic acids …
Protein ensembles: how does nature harness thermodynamic fluctuations for life? The diverse functional roles of conformational ensembles in the cell
All soluble proteins populate conformational ensembles that together constitute the native
state. Their fluctuations in water are intrinsic thermodynamic phenomena, and the …
state. Their fluctuations in water are intrinsic thermodynamic phenomena, and the …
Precision and accuracy of single-molecule FRET measurements—a multi-laboratory benchmark study
Single-molecule Förster resonance energy transfer (smFRET) is increasingly being used to
determine distances, structures, and dynamics of biomolecules in vitro and in vivo. However …
determine distances, structures, and dynamics of biomolecules in vitro and in vivo. However …
Identification of slow molecular order parameters for Markov model construction
G Pérez-Hernández, F Paul, T Giorgino… - The Journal of …, 2013 - pubs.aip.org
A goal in the kinetic characterization of a macromolecular system is the description of its
slow relaxation processes via (i) identification of the structural changes involved in these …
slow relaxation processes via (i) identification of the structural changes involved in these …
Markov models of molecular kinetics: Generation and validation
Markov state models of molecular kinetics (MSMs), in which the long-time statistical
dynamics of a molecule is approximated by a Markov chain on a discrete partition of …
dynamics of a molecule is approximated by a Markov chain on a discrete partition of …
Photophysics of fluorescent probes for single-molecule biophysics and super-resolution imaging
T Ha, P Tinnefeld - Annual review of physical chemistry, 2012 - annualreviews.org
Single-molecule fluorescence spectroscopy and super-resolution microscopy are important
elements of the ongoing technical revolution to reveal biochemical and cellular processes in …
elements of the ongoing technical revolution to reveal biochemical and cellular processes in …
FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices
Single-molecule FRET (smFRET) has become a mainstream technique for studying
biomolecular structural dynamics. The rapid and wide adoption of smFRET experiments by …
biomolecular structural dynamics. The rapid and wide adoption of smFRET experiments by …
Sequential requirements for distinct Polθ domains during theta-mediated end joining
C Fijen, LD Beckham, D Terino, Y Li, DA Ramsden… - Molecular Cell, 2024 - cell.com
DNA polymerase θ (Polθ) plays a central role in a DNA double-strand break repair pathway
termed theta-mediated end joining (TMEJ). TMEJ functions by pairing short-sequence" …
termed theta-mediated end joining (TMEJ). TMEJ functions by pairing short-sequence" …
Alternating-laser excitation: single-molecule FRET and beyond
The alternating-laser excitation (ALEX) scheme continues to expand the possibilities of
fluorescence-based assays to study biological entities and interactions. Especially the …
fluorescence-based assays to study biological entities and interactions. Especially the …
Combining MFD and PIE for accurate single‐pair Förster resonance energy transfer measurements
V Kudryavtsev, M Sikor, S Kalinin… - …, 2012 - Wiley Online Library
Single‐pair Förster resonance energy transfer (spFRET) experiments using single‐molecule
burst analysis on a confocal microscope are an ideal tool to measure inter‐and …
burst analysis on a confocal microscope are an ideal tool to measure inter‐and …