Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently
The amino acid sequence of a protein affects both its structure and its function. Thus, the
ability to modify the sequence, and hence the structure and activity, of individual proteins in …
ability to modify the sequence, and hence the structure and activity, of individual proteins in …
A review of methods available to estimate solvent-accessible surface areas of soluble proteins in the folded and unfolded states
S Ausaf Ali, M Imtaiyaz Hassan, A Islam… - Current Protein and …, 2014 - benthamdirect.com
Solvent accessible surface area (SASA) of proteins has always been considered as a
decisive factor in protein folding and stability studies. It is defined as the surface …
decisive factor in protein folding and stability studies. It is defined as the surface …
BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes
Antibodies have become an indispensable tool for many biotechnological and clinical
applications. They bind their molecular target (antigen) by recognizing a portion of its …
applications. They bind their molecular target (antigen) by recognizing a portion of its …
NetSurfP‐2.0: Improved prediction of protein structural features by integrated deep learning
The ability to predict local structural features of a protein from the primary sequence is of
paramount importance for unraveling its function in absence of experimental structural …
paramount importance for unraveling its function in absence of experimental structural …
GPS 5.0: an update on the prediction of kinase-specific phosphorylation sites in proteins
In eukaryotes, protein phosphorylation is specifically catalyzed by numerous protein kinases
(PKs), faithfully orchestrates various biological processes, and reversibly determines cellular …
(PKs), faithfully orchestrates various biological processes, and reversibly determines cellular …
Systematic functional annotation of somatic mutations in cancer
The functional impact of the vast majority of cancer somatic mutations remains unknown,
representing a critical knowledge gap for implementing precision oncology. Here, we report …
representing a critical knowledge gap for implementing precision oncology. Here, we report …
Retraction of DNA-bound type IV competence pili initiates DNA uptake during natural transformation in Vibrio cholerae
CK Ellison, TN Dalia, A Vidal Ceballos, JCY Wang… - Nature …, 2018 - nature.com
Natural transformation is a broadly conserved mechanism of horizontal gene transfer in
bacterial species that can shape evolution and foster the spread of antibiotic resistance …
bacterial species that can shape evolution and foster the spread of antibiotic resistance …
A highly conserved program of neuronal microexons is misregulated in autistic brains
Alternative splicing (AS) generates vast transcriptomic and proteomic complexity. However,
which of the myriad of detected AS events provide important biological functions is not well …
which of the myriad of detected AS events provide important biological functions is not well …
Uncovering global SUMOylation signaling networks in a site-specific manner
SUMOylation is a reversible post-translational modification essential for genome stability.
Using high-resolution MS, we have studied global SUMOylation in human cells in a site …
Using high-resolution MS, we have studied global SUMOylation in human cells in a site …
Obstruction of pilus retraction stimulates bacterial surface sensing
It is critical for bacteria to recognize surface contact and initiate physiological changes
required for surface-associated lifestyles. Ubiquitous microbial appendages called pili are …
required for surface-associated lifestyles. Ubiquitous microbial appendages called pili are …