Harnessing the power of RADseq for ecological and evolutionary genomics

KR Andrews, JM Good, MR Miller, G Luikart… - Nature Reviews …, 2016 - nature.com
High-throughput techniques based on restriction site-associated DNA sequencing (RADseq)
are enabling the low-cost discovery and genotyping of thousands of genetic markers for any …

Searching for sympatric speciation in the genomic era

EJ Richards, MR Servedio, CH Martin - BioEssays, 2019 - Wiley Online Library
Sympatric speciation illustrates how natural and sexual selection may create new species in
isolation without geographic barriers. However, recent genomic reanalyses of classic …

RADseq provides unprecedented insights into molecular ecology and evolutionary genetics: comment on Breaking RAD by Lowry et al. (2016)

GJ McKinney, WA Larson, LW Seeb… - Molecular ecology …, 2017 - Wiley Online Library
In their recently corrected manuscript,“Breaking RAD: An evaluation of the utility of restriction
site associated DNA sequencing for genome scans of adaptation”, Lowry et al. argue that …

Adaptive introgression from distant Caribbean islands contributed to the diversification of a microendemic adaptive radiation of trophic specialist pupfishes

EJ Richards, CH Martin - PLoS genetics, 2017 - journals.plos.org
Rapid diversification often involves complex histories of gene flow that leave variable and
conflicting signatures of evolutionary relatedness across the genome. Identifying the extent …

Multispecies outcomes of sympatric speciation after admixture with the source population in two radiations of Nicaraguan crater lake cichlids

AF Kautt, G Machado-Schiaffino, A Meyer - PLoS genetics, 2016 - journals.plos.org
The formation of species in the absence of geographic barriers (ie sympatric speciation)
remains one of the most controversial topics in evolutionary biology. While theoretical …

Lost crops of the Incas: Origins of domestication of the Andean pulse crop tarwi, Lupinus mutabilis

GW Atchison, B Nevado, RJ Eastwood… - American journal of …, 2016 - Wiley Online Library
PREMISE OF THE STUDY: The Andean highlands are a hotspot of domestication, yet our
understanding of the origins of early Andean agriculture remains fragmentary. Key questions …

Genetic variation and hybridization in evolutionary radiations of cichlid fishes

H Svardal, W Salzburger… - Annual Review of Animal …, 2021 - annualreviews.org
Evolutionary radiations are responsible for much of the variation in biodiversity across taxa.
Cichlid fishes are well known for spectacular evolutionary radiations, as they have …

Exon-based phylogenomics and the relationships of African cichlid fishes: tackling the challenges of reconstructing phylogenies with repeated rapid radiations

V Astudillo-Clavijo, MLJ Stiassny, KL Ilves… - Systematic …, 2023 - academic.oup.com
African cichlids (subfamily: Pseudocrenilabrinae) are among the most diverse vertebrates,
and their propensity for repeated rapid radiation has made them a celebrated model system …

Genomics of speciation and introgression in Princess cichlid fishes from Lake Tanganyika

HF Gante, M Matschiner, M Malmstrøm… - Molecular …, 2016 - Wiley Online Library
How variation in the genome translates into biological diversity and new species originate
has endured as the mystery of mysteries in evolutionary biology. African cichlid fishes are …

Molecular phylogeny of Oreochromis (Cichlidae: Oreochromini) reveals mito-nuclear discordance and multiple colonisation of adverse aquatic environments

AGP Ford, TR Bullen, L Pang, MJ Genner… - Molecular Phylogenetics …, 2019 - Elsevier
Although the majority of cichlid diversity occurs in the African Great Lakes, these fish have
also diversified across the African continent. Such continental radiations, occurring in both …