Evolution by gene loss

R Albalat, C Cañestro - Nature Reviews Genetics, 2016 - nature.com
The recent increase in genomic data is revealing an unexpected perspective of gene loss as
a pervasive source of genetic variation that can cause adaptive phenotypic diversity. This …

[HTML][HTML] Global genetic networks and the genotype-to-phenotype relationship

M Costanzo, E Kuzmin, J van Leeuwen, B Mair… - Cell, 2019 - cell.com
Genetic interactions identify combinations of genetic variants that impinge on phenotype.
With whole-genome sequence information available for thousands of individuals within a …

A global genetic interaction network maps a wiring diagram of cellular function

M Costanzo, B VanderSluis, EN Koch, A Baryshnikova… - Science, 2016 - science.org
INTRODUCTION Genetic interactions occur when mutations in two or more genes combine
to generate an unexpected phenotype. An extreme negative or synthetic lethal genetic …

Combinatorial CRISPR–Cas9 screens for de novo mapping of genetic interactions

JP Shen, D Zhao, R Sasik, J Luebeck, A Birmingham… - Nature …, 2017 - nature.com
We developed a systematic approach to map human genetic networks by combinatorial
CRISPR–Cas9 perturbations coupled to robust analysis of growth kinetics. We targeted all …

Systematic analysis of complex genetic interactions

E Kuzmin, B VanderSluis, W Wang, G Tan… - Science, 2018 - science.org
INTRODUCTION Genetic interactions occur when mutations in different genes combine to
result in a phenotype that is different from expectation based on those of the individual …

Yeast: an experimental organism for 21st century biology

D Botstein, GR Fink - Genetics, 2011 - academic.oup.com
In this essay, we revisit the status of yeast as a model system for biology. We first summarize
important contributions of yeast to eukaryotic biology that we anticipated in 1988 in our first …

The yeast deletion collection: a decade of functional genomics

G Giaever, C Nislow - Genetics, 2014 - academic.oup.com
The yeast deletion collections comprise> 21,000 mutant strains that carry precise start-to-
stop deletions of∼ 6000 open reading frames. This collection includes heterozygous and …

[HTML][HTML] Genetic interactions in cancer progression and treatment

A Ashworth, CJ Lord, JS Reis-Filho - Cell, 2011 - cell.com
As cancer cell genomes are unveiled at a breathtaking pace, the genetic principles at play in
cancer are emerging in all their complexity, prompting the assessment of classical genetic …

Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress

JM Tkach, A Yimit, AY Lee, M Riffle, M Costanzo… - Nature cell …, 2012 - nature.com
Relocalization of proteins is a hallmark of the DNA damage response. We use high-
throughput microscopic screening of the yeast GFP fusion collection to develop a systems …

Systematic exploration of synergistic drug pairs

M Cokol, HN Chua, M Tasan, B Mutlu… - Molecular systems …, 2011 - embopress.org
Drug synergy allows a therapeutic effect to be achieved with lower doses of component
drugs. Drug synergy can result when drugs target the products of genes that act in parallel …