Using machine learning approaches for multi-omics data analysis: A review

PS Reel, S Reel, E Pearson, E Trucco… - Biotechnology advances, 2021 - Elsevier
With the development of modern high-throughput omic measurement platforms, it has
become essential for biomedical studies to undertake an integrative (combined) approach to …

Missing value imputation: a review and analysis of the literature (2006–2017)

WC Lin, CF Tsai - Artificial Intelligence Review, 2020 - Springer
Missing value imputation (MVI) has been studied for several decades being the basic
solution method for incomplete dataset problems, specifically those where some data …

The Perseus computational platform for comprehensive analysis of (prote) omics data

S Tyanova, T Temu, P Sinitcyn, A Carlson, MY Hein… - Nature …, 2016 - nature.com
A main bottleneck in proteomics is the downstream biological analysis of highly multivariate
quantitative protein abundance data generated using mass-spectrometry-based analysis …

From predictive methods to missing data imputation: an optimization approach

D Bertsimas, C Pawlowski, YD Zhuo - Journal of Machine Learning …, 2018 - jmlr.org
Missing data is a common problem in real-world settings and for this reason has attracted
significant attention in the statistical literature. We propose a flexible framework based on …

A nifty collaborative analysis to predicting a novel tool (DRFLLS) for missing values estimation

S Al-Janabi, AF Alkaim - Soft Computing, 2020 - Springer
One of the important trends in an intelligent data analysis will be the growing importance of
data processing. But this point faces problems similar to those of data mining (ie, high …

Machine learning for big data analytics in plants

C Ma, HH Zhang, X Wang - Trends in plant science, 2014 - cell.com
Rapid advances in high-throughput genomic technology have enabled biology to enter the
era of 'Big Data'(large datasets). The plant science community not only needs to build its …

[PDF][PDF] NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses

S Wang, W Li, L Hu, J Cheng, H Yang… - Nucleic acids …, 2020 - academic.oup.com
Mass spectrometry (MS)-based quantitative proteomics experiments frequently generate
data with missing values, which may profoundly affect downstream analyses. A wide variety …

Challenges in biomarker discovery: combining expert insights with statistical analysis of complex omics data

JE McDermott, J Wang, H Mitchell… - Expert opinion on …, 2013 - Taylor & Francis
Introduction: The advent of high throughput technologies capable of comprehensive
analysis of genes, transcripts, proteins and other significant biological molecules has …

Applications of multi‐omics analysis in human diseases

C Chen, J Wang, D Pan, X Wang, Y Xu, J Yan… - MedComm, 2023 - Wiley Online Library
Multi‐omics usually refers to the crossover application of multiple high‐throughput screening
technologies represented by genomics, transcriptomics, single‐cell transcriptomics …

K-nearest neighbor (k-NN) based missing data imputation

U Pujianto, AP Wibawa, MI Akbar - 2019 5th International …, 2019 - ieeexplore.ieee.org
The performance of the classification algorithm depends on the quality of the training data.
Data quality is an important factor that affects the data mining classification results. However …