DNA curvature and flexibility in vitro and in vivo

JP Peters, LJ Maher III - Quarterly reviews of biophysics, 2010 - cambridge.org
It has been more than 50 years since the elucidation of the structure of double-helical DNA.
Despite active research and progress in DNA biology and biochemistry, much remains to be …

The λ integrase site‐specific recombination pathway

A Landy - Mobile DNA III, 2015 - Wiley Online Library
The λ site‐specific recombination pathway has enjoyed the sequential attentions of
geneticists, biochemists, and structural biologists for more than 50 years. It has proven to be …

Kinetic gating mechanism of DNA damage recognition by Rad4/XPC

X Chen, Y Velmurugu, G Zheng, B Park, Y Shim… - Nature …, 2015 - nature.com
The xeroderma pigmentosum C (XPC) complex initiates nucleotide excision repair by
recognizing DNA lesions before recruiting downstream factors. How XPC detects structurally …

Time-resolved methods in biophysics. 9. Laser temperature-jump methods for investigating biomolecular dynamics

J Kubelka - Photochemical & Photobiological Sciences, 2009 - pubs.rsc.org
Many important biochemical processes occur on the time-scales of nanoseconds and
microseconds. The introduction of the laser temperature-jump (T-jump) to biophysics more …

Twist-open mechanism of DNA damage recognition by the Rad4/XPC nucleotide excision repair complex

Y Velmurugu, X Chen… - Proceedings of the …, 2016 - National Acad Sciences
DNA damage repair starts with the recognition of damaged sites from predominantly normal
DNA. In eukaryotes, diverse DNA lesions from environmental sources are recognized by the …

AAA+ ATPases in the initiation of DNA replication

KE Duderstadt, JM Berger - Critical reviews in biochemistry and …, 2008 - Taylor & Francis
All cellular organisms and many viruses rely on large, multi-subunit molecular machines,
termed replisomes, to ensure that genetic material is accurately duplicated for transmission …

Mechanical flexibility of DNA: a quintessential tool for DNA nanotechnology

R Saran, Y Wang, ITS Li - Sensors, 2020 - mdpi.com
The mechanical properties of DNA have enabled it to be a structural and sensory element in
many nanotechnology applications. While specific base-pairing interactions and secondary …

Spectroscopic studies of protein folding: linear and nonlinear methods

AL Serrano, MM Waegele, F Gai - Protein Science, 2012 - Wiley Online Library
Although protein folding is a simple outcome of the underlying thermodynamics, arriving at a
quantitative and predictive understanding of how proteins fold nevertheless poses huge …

Integration host factor and LuxR synergistically bind DNA to coactivate quorum‐sensing genes in Vibrio harveyi

RR Chaparian, SG Olney, CM Hustmyer… - Molecular …, 2016 - Wiley Online Library
The cell–cell signaling process called quorum sensing allows bacteria to control behaviors
in response to changes in population density. In Vibrio harveyi, the master quorum‐sensing …

Stepwise binding and bending of DNA by Escherichia coli integration host factor

S Sugimura, DM Crothers - Proceedings of the National …, 2006 - National Acad Sciences
Integration host factor (IHF) is a prokaryotic protein required for the integration of λ phage
DNA into its host genome. An x-ray crystal structure of the complex shows that IHF binds to …