Toward a fully resolved fungal tree of life

TY James, JE Stajich, CT Hittinger… - Annual Review of …, 2020 - annualreviews.org
In this review, we discuss the current status and future challenges for fully elucidating the
fungal tree of life. In the last 15 years, advances in genomic technologies have …

Belowground biodiversity and ecosystem functioning

RD Bardgett, WH Van Der Putten - Nature, 2014 - nature.com
Evidence is mounting that the immense diversity of microorganisms and animals that live
belowground contributes significantly to shaping aboveground biodiversity and the …

High-level classification of the Fungi and a tool for evolutionary ecological analyses

L Tedersoo, S Sánchez-Ramírez, U Koljalg, M Bahram… - Fungal diversity, 2018 - Springer
High-throughput sequencing studies generate vast amounts of taxonomic data. Evolutionary
ecological hypotheses of the recovered taxa and Species Hypotheses are difficult to test due …

FUNGuild: an open annotation tool for parsing fungal community datasets by ecological guild

NH Nguyen, Z Song, ST Bates, S Branco, L Tedersoo… - Fungal ecology, 2016 - Elsevier
Fungi typically live in highly diverse communities composed of multiple ecological guilds.
Although high-throughput sequencing has greatly increased the ability to quantify the …

Biophysical processes supporting the diversity of microbial life in soil

R Tecon, D Or - FEMS microbiology reviews, 2017 - academic.oup.com
Soil, the living terrestrial skin of the Earth, plays a central role in supporting life and is home
to an unimaginable diversity of microorganisms. This review explores key drivers for …

The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts

SC Jayasiri, KD Hyde, HA Ariyawansa, J Bhat, B Buyck… - Fungal diversity, 2015 - Springer
Taxonomic names are key links between various databases that store information on
different organisms. Several global fungal nomenclural and taxonomic databases (notably …

Direct and indirect effects of climate change on soil microbial and soil microbial‐plant interactions: What lies ahead?

AT Classen, MK Sundqvist, JA Henning… - …, 2015 - Wiley Online Library
Global change is altering species distributions and thus interactions among organisms.
Organisms live in concert with thousands of other species, some beneficial, some …

[PDF][PDF] Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

L Tedersoo, S Anslan, M Bahram, S Põlme, T Riit… - …, 2015 - mycokeys.pensoft.net
Rapid development of high-throughput (HTS) molecular identification methods has
revolutionized our knowledge about taxonomic diversity and ecology of fungi. However …

The fungal tree of life: from molecular systematics to genome‐scale phylogenies

JW Spatafora, MC Aime, IV Grigoriev… - The fungal …, 2017 - Wiley Online Library
In 1996 the genome of Saccharomyces cerevisiae was published and marked the beginning
of a new era in fungal biology (1). Since then, rapid advancements in both sequencing …

The Fungi: 1, 2, 3… 5.1 million species?

M Blackwell - American journal of botany, 2011 - Wiley Online Library
• Premise of the study: Fungi are major decomposers in certain ecosystems and essential
associates of many organisms. They provide enzymes and drugs and serve as experimental …