Methods and models for unravelling human evolutionary history

JG Schraiber, JM Akey - Nature Reviews Genetics, 2015 - nature.com
The genomes of contemporary humans contain considerable information about the history of
our species. Although the general contours of human evolutionary history have been …

Recent progress in coalescent theory

N Berestycki - arXiv preprint arXiv:0909.3985, 2009 - arxiv.org
Coalescent theory is the study of random processes where particles may join each other to
form clusters as time evolves. These notes provide an introduction to some aspects of the …

Extant timetrees are consistent with a myriad of diversification histories

S Louca, MW Pennell - Nature, 2020 - nature.com
Time-calibrated phylogenies of extant species (referred to here as 'extant timetrees') are
widely used for estimating diversification dynamics. However, there has been considerable …

Coalescent theory

M Nordborg - Handbook of Statistical Genomics: Two Volume …, 2019 - Wiley Online Library
Whereas most of classical population genetics considers the future of a population given a
starting point, the coalescent considers the present, while taking the past into account. The …

The general coalescent with asynchronous mergers of ancestral lines

S Sagitov - Journal of Applied Probability, 1999 - cambridge.org
Take a sample of individuals in the fixed-size population model with exchangeable family
sizes. Follow the ancestral lines for the sampled individuals backwards in time to observe …

A classification of coalescent processes for haploid exchangeable population models

M Mohle, S Sagitov - Annals of Probability, 2001 - JSTOR
We consider a class of haploid population models with nonoverlapping generations and
fixed population size N assuming that the family sizes within a generation are exchangeable …

Coalescent processes when the distribution of offspring number among individuals is highly skewed

B Eldon, J Wakeley - Genetics, 2006 - academic.oup.com
We report a complex set of scaling relationships between mutation and reproduction in a
simple model of a population. These follow from a consideration of patterns of genetic …

Gene genealogies in a metapopulation

J Wakeley, N Aliacar - Genetics, 2001 - academic.oup.com
A simple genealogical process is found for samples from a metapopulation, which is a
population that is subdivided into a large number of demes, each of which is subject to …

[HTML][HTML] Coalescent processes obtained from supercritical Galton–Watson processes

J Schweinsberg - Stochastic processes and their Applications, 2003 - Elsevier
Consider a population model in which there are N individuals in each generation. One can
obtain a coalescent tree by sampling n individuals from the current generation and following …

On the meaning and existence of an effective population size

P Sjodin, I Kaj, S Krone, M Lascoux, M Nordborg - Genetics, 2005 - academic.oup.com
We investigate conditions under which a model with stochastic demography or population
structure converges to the coalescent with a linear change in timescale. We argue that this is …