Intron retention as a component of regulated gene expression programs
Intron retention has long been an exemplar of regulated splicing with case studies of
individual events serving as models that provided key mechanistic insights into the process …
individual events serving as models that provided key mechanistic insights into the process …
EMT and stemness: flexible processes tuned by alternative splicing in development and cancer progression
D Pradella, C Naro, C Sette, C Ghigna - Molecular cancer, 2017 - Springer
Epithelial-to-mesenchymal transition (EMT) is associated with metastasis formation as well
as with generation and maintenance of cancer stem cells. In this way, EMT contributes to …
as with generation and maintenance of cancer stem cells. In this way, EMT contributes to …
Alternative splicing and protein diversity: plants versus animals
S Chaudhary, W Khokhar, I Jabre, ASN Reddy… - Frontiers in plant …, 2019 - frontiersin.org
Plants, unlike animals, exhibit a very high degree of plasticity in their growth and
development and employ diverse strategies to cope with the variations during diurnal cycles …
development and employ diverse strategies to cope with the variations during diurnal cycles …
IRFinder: assessing the impact of intron retention on mammalian gene expression
Intron retention (IR) occurs when an intron is transcribed into pre-mRNA and remains in the
final mRNA. We have developed a program and database called IRFinder to accurately …
final mRNA. We have developed a program and database called IRFinder to accurately …
The changing paradigm of intron retention: regulation, ramifications and recipes
Intron retention (IR) is a form of alternative splicing that has long been neglected in
mammalian systems although it has been studied for decades in non-mammalian species …
mammalian systems although it has been studied for decades in non-mammalian species …
Comprehensive proteomic analysis of human erythropoiesis
EF Gautier, S Ducamp, M Leduc, V Salnot… - Cell reports, 2016 - cell.com
Mass spectrometry-based proteomics now enables the absolute quantification of thousands
of proteins in individual cell types. We used this technology to analyze the dynamic …
of proteins in individual cell types. We used this technology to analyze the dynamic …
FUS ALS-causative mutations impair FUS autoregulation and splicing factor networks through intron retention
J Humphrey, N Birsa, C Milioto… - Nucleic acids …, 2020 - academic.oup.com
Mutations in the RNA-binding protein FUS cause amyotrophic lateral sclerosis (ALS), a
devastating neurodegenerative disease. FUS plays a role in numerous aspects of RNA …
devastating neurodegenerative disease. FUS plays a role in numerous aspects of RNA …
An orchestrated intron retention program in meiosis controls timely usage of transcripts during germ cell differentiation
C Naro, A Jolly, S Di Persio, P Bielli, N Setterblad… - Developmental cell, 2017 - cell.com
Global transcriptome reprogramming during spermatogenesis ensures timely expression of
factors in each phase of male germ cell differentiation. Spermatocytes and spermatids …
factors in each phase of male germ cell differentiation. Spermatocytes and spermatids …
Intron retention is regulated by altered MeCP2-mediated splicing factor recruitment
While intron retention (IR) is considered a widely conserved and distinct mechanism of gene
expression control, its regulation is poorly understood. Here we show that DNA methylation …
expression control, its regulation is poorly understood. Here we show that DNA methylation …
Intron retention and its impact on gene expression and protein diversity: A review and a practical guide
DF Grabski, L Broseus, B Kumari… - Wiley …, 2021 - Wiley Online Library
Intron retention (IR) occurs when a complete and unspliced intron remains in mature mRNA.
An increasing body of literature has demonstrated a major role for IR in numerous biological …
An increasing body of literature has demonstrated a major role for IR in numerous biological …