The new tree of eukaryotes

F Burki, AJ Roger, MW Brown, AGB Simpson - Trends in ecology & …, 2020 - cell.com
For 15 years, the eukaryote Tree of Life (eToL) has been divided into five to eight major
groupings, known as 'supergroups'. However, the tree has been profoundly rearranged …

Toward a fully resolved fungal tree of life

TY James, JE Stajich, CT Hittinger… - Annual Review of …, 2020 - annualreviews.org
In this review, we discuss the current status and future challenges for fully elucidating the
fungal tree of life. In the last 15 years, advances in genomic technologies have …

AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination

TC Terwilliger, D Liebschner, TI Croll, CJ Williams… - Nature …, 2024 - nature.com
Artificial intelligence-based protein structure prediction methods such as AlphaFold have
revolutionized structural biology. The accuracies of these predictions vary, however, and …

Integrated phylogenomics and fossil data illuminate the evolution of beetles

C Cai, E Tihelka, M Giacomelli… - Royal Society …, 2022 - royalsocietypublishing.org
Beetles constitute the most biodiverse animal order with over 380 000 described species
and possibly several million more yet unnamed. Recent phylogenomic studies have arrived …

The origin and diversification of mitochondria

AJ Roger, SA Muñoz-Gómez, R Kamikawa - Current Biology, 2017 - cell.com
Mitochondria are best known for their role in the generation of ATP by aerobic respiration.
Yet, research in the past half century has shown that they perform a much larger suite of …

Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea

Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar… - Nature …, 2019 - nature.com
Rapid growth of genome data provides opportunities for updating microbial evolutionary
relationships, but this is challenged by the discordant evolution of individual genes. Here we …

Snowball Earth climate dynamics and Cryogenian geology-geobiology

PF Hoffman, DS Abbot, Y Ashkenazy, DI Benn… - Science …, 2017 - science.org
Geological evidence indicates that grounded ice sheets reached sea level at all latitudes
during two long-lived Cryogenian (58 and≥ 5 My) glaciations. Combined uranium-lead and …

Revisiting metazoan phylogeny with genomic sampling of all phyla

CE Laumer, R Fernández, S Lemer… - … of the royal …, 2019 - royalsocietypublishing.org
Proper biological interpretation of a phylogeny can sometimes hinge on the placement of
key taxa—or fail when such key taxa are not sampled. In this light, we here present the first …

Divergent evolutionary trajectories of bryophytes and tracheophytes from a complex common ancestor of land plants

BJ Harris, JW Clark, D Schrempf, GJ Szöllősi… - Nature Ecology & …, 2022 - nature.com
The origin of plants and their colonization of land fundamentally transformed the terrestrial
environment. Here we elucidate the basis of this formative episode in Earth history through …

A large and consistent phylogenomic dataset supports sponges as the sister group to all other animals

P Simion, H Philippe, D Baurain, M Jager, DJ Richter… - Current biology, 2017 - cell.com
Resolving the early diversification of animal lineages has proven difficult, even using
genome-scale datasets. Several phylogenomic studies have supported the classical …