Engineering genetic circuits: advancements in genetic design automation tools and standards for synthetic biology
L Buecherl, CJ Myers - Current opinion in microbiology, 2022 - Elsevier
Highlights•Synthetic biology aims to apply engineering principles in biology.•Insufficient part
libraries, standards, and software are challenges to the field.•Working on the challenges will …
libraries, standards, and software are challenges to the field.•Working on the challenges will …
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022
M König, P Gleeson, M Golebiewski… - Journal of Integrative …, 2023 - degruyter.com
This special issue of the Journal of Integrative Bioinformatics contains updated
specifications of COMBINE standards in systems and synthetic biology. The 2022 special …
specifications of COMBINE standards in systems and synthetic biology. The 2022 special …
[HTML][HTML] The GB4. 0 platform, an all-in-one tool for CRISPR/Cas-based multiplex genome engineering in plants
M Vazquez-Vilar, V Garcia-Carpintero… - Frontiers in Plant …, 2021 - frontiersin.org
CRISPR/Cas ability to target several loci simultaneously (multiplexing) is a game-changer in
plant breeding. Multiplexing not only accelerates trait pyramiding but also can unveil traits …
plant breeding. Multiplexing not only accelerates trait pyramiding but also can unveil traits …
A network approach to genetic circuit designs
M Crowther, A Wipat, Á Goñi-Moreno - ACS synthetic biology, 2022 - ACS Publications
As genetic circuits become more sophisticated, the size and complexity of data about their
designs increase. The data captured goes beyond genetic sequences alone; information …
designs increase. The data captured goes beyond genetic sequences alone; information …
Synbiosuite: a tool for improving the workflow for genetic design and modeling
Z Sents, TE Stoughton, L Buecherl… - ACS Synthetic …, 2023 - ACS Publications
Synthetic biology research has led to the development of many software tools for designing,
constructing, editing, simulating, and sharing genetic parts and circuits. Among these tools …
constructing, editing, simulating, and sharing genetic parts and circuits. Among these tools …
Specifications of standards in systems and synthetic biology
Standards shape our everyday life. From nuts and bolts to electronic devices and
technological processes, standardised products and processes are all around us. Standards …
technological processes, standardised products and processes are all around us. Standards …
Stochastic hazard analysis of genetic circuits in iBioSim and STAMINA
L Buecherl, R Roberts, P Fontanarrosa… - ACS synthetic …, 2021 - ACS Publications
In synthetic biology, combinational circuits are used to program cells for various new
applications like biosensors, drug delivery systems, and biofuels. Similar to asynchronous …
applications like biosensors, drug delivery systems, and biofuels. Similar to asynchronous …
Virtual Parts Repository 2: Model-driven design of genetic regulatory circuits
Engineering genetic regulatory circuits is key to the creation of biological applications that
are responsive to environmental changes. Computational models can assist in …
are responsive to environmental changes. Computational models can assist in …
[HTML][HTML] Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024
M Golebiewski, G Bader, P Gleeson… - Journal of Integrative …, 2024 - degruyter.com
The “COmputational Modeling in BIology NEtwork”(COMBINE) initiative aims to harmonise
the development of diverse community standards for computational models in biology [1, 2] …
the development of diverse community standards for computational models in biology [1, 2] …
[HTML][HTML] Specifications of standards in systems and synthetic biology: status and developments in 2021
This special issue of the Journal of Integrative Bioinformatics contains updated
specifications of COMBINE standards in systems and synthetic biology. The 2021 special …
specifications of COMBINE standards in systems and synthetic biology. The 2021 special …