[HTML][HTML] Protein diversification through post-translational modifications, alternative splicing, and gene duplication

Y Goldtzvik, N Sen, SD Lam, C Orengo - Current Opinion in Structural …, 2023 - Elsevier
Proteins provide the basis for cellular function. Having multiple versions of the same protein
within a single organism provides a way of regulating its activity or developing novel …

Protein phosphorylation database and prediction tools

MX Zhao, Q Chen, F Li, S Fu, B Huang… - Briefings in …, 2023 - academic.oup.com
Protein phosphorylation, one of the main protein post-translational modifications, is required
for regulating various life activities. Kinases and phosphatases that regulate protein …

dbPTM in 2022: an updated database for exploring regulatory networks and functional associations of protein post-translational modifications

Z Li, S Li, M Luo, JH Jhong, W Li, L Yao… - Nucleic acids …, 2022 - academic.oup.com
Protein post-translational modifications (PTMs) play an important role in different cellular
processes. In view of the importance of PTMs in cellular functions and the massive data …

A Review of Machine Learning and Algorithmic Methods for Protein Phosphorylation Site Prediction

F Esmaili, M Pourmirzaei, S Ramazi… - Genomics …, 2023 - academic.oup.com
Post-translational modifications (PTMs) have key roles in extending the functional diversity
of proteins and, as a result, regulating diverse cellular processes in prokaryotic and …

GPS-SUMO 2.0: an updated online service for the prediction of SUMOylation sites and SUMO-interacting motifs

Y Gou, D Liu, M Chen, Y Wei, X Huang… - Nucleic Acids …, 2024 - academic.oup.com
Small ubiquitin-like modifiers (SUMOs) are tiny but important protein regulators involved in
orchestrating a broad spectrum of biological processes, either by covalently modifying …

Human phospho‐signaling networks of SARS‐CoV‐2 infection are rewired by population genetic variants

D Pellegrina, AT Bahcheli, M Krassowski… - Molecular Systems …, 2022 - embopress.org
SARS‐CoV‐2 infection hijacks signaling pathways and induces protein–protein interactions
between human and viral proteins. Human genetic variation may impact SARS‐CoV‐2 …

Germline genetic biomarkers to stratify patients for personalized radiation treatment

I Deichaite, A Hopper, L Krockenberger… - Journal of translational …, 2022 - Springer
Background Precision medicine incorporating genetic profiling is becoming a standard of
care in medical oncology. However, in the field of radiation oncology there is limited use of …

From 'omics to multi-omics technologies: the discovery of novel causal mediators

P Mohammadi-Shemirani, T Sood, G Paré - Current atherosclerosis …, 2023 - Springer
Abstract Purpose of Review 'Omics studies provide a comprehensive characterisation of a
biological entity, such as the genome, epigenome, transcriptome, proteome, metabolome, or …

Functional analysis of the stable phosphoproteome reveals cancer vulnerabilities

D Xiao, HJ Kim, I Pang, P Yang - Bioinformatics, 2022 - academic.oup.com
Motivation The advance of mass spectrometry-based technologies enabled the profiling of
the phosphoproteomes of a multitude of cell and tissue types. However, current research …

Comprehensive in silico prioritization of pathogenic nsSNPs in human β-adducin gene towards finding its relation with cancer

AM Goswami - Human Gene, 2022 - Elsevier
The adducin family consists of three closely related proteins ADD1 (α-isoform), ADD2 (β-
isoform) and ADD3 (γ-isoform) with similar domain structures. Adducins exist as …