YcaO-dependent posttranslational amide activation: biosynthesis, structure, and function

BJ Burkhart, CJ Schwalen, G Mann, JH Naismith… - Chemical …, 2017 - ACS Publications
With advances in sequencing technology, uncharacterized proteins and domains of
unknown function (DUFs) are rapidly accumulating in sequence databases and offer an …

[HTML][HTML] The microbial toxin microcin B17: prospects for the development of new antibacterial agents

F Collin, A Maxwell - Journal of molecular biology, 2019 - Elsevier
Abstract Microcin B17 (MccB17) is an antibacterial peptide produced by strains of
Escherichia coli harboring the plasmid-borne mccB17 operon. MccB17 possesses many …

Sorting out antibiotics' mechanisms of action: a double fluorescent protein reporter for high-throughput screening of ribosome and DNA biosynthesis inhibitors

IA Osterman, ES Komarova, DI Shiryaev… - Antimicrobial agents …, 2016 - Am Soc Microbiol
In order to accelerate drug discovery, a simple, reliable, and cost-effective system for high-
throughput identification of a potential antibiotic mechanism of action is required. To facilitate …

YcaO domains use ATP to activate amide backbones during peptide cyclodehydrations

KL Dunbar, JO Melby, DA Mitchell - Nature chemical biology, 2012 - nature.com
Thiazole/oxazole-modified microcins (TOMMs) encompass a recently defined class of
ribosomally synthesized natural products with a diverse set of biological activities. Although …

YcaO-mediated ATP-dependent peptidase activity in ribosomal peptide biosynthesis

Y Zheng, SK Nair - Nature chemical biology, 2023 - nature.com
YcaO enzymes catalyze ATP-dependent post-translation modifications on peptides,
including the installation of (ox/thi) azoline, thioamide and/or amidine moieties. Here we …

Architecture of microcin B17 synthetase: an octameric protein complex converting a ribosomally synthesized peptide into a DNA gyrase poison

D Ghilarov, CEM Stevenson, DY Travin, J Piskunova… - Molecular cell, 2019 - cell.com
The introduction of azole heterocycles into a peptide backbone is the principal step in the
biosynthesis of numerous compounds with therapeutic potential. One of them is microcin …

Recognition sequences and substrate evolution in cyanobactin biosynthesis

D Sardar, E Pierce, JA McIntosh… - ACS Synthetic …, 2015 - ACS Publications
Ribosomally synthesized and posttranslationally modified peptide (RiPP) natural products
are of broad interest because of their intrinsic bioactivities and potential for synthetic biology …

The origins of specificity in the microcin-processing protease TldD/E

D Ghilarov, M Serebryakova, CEM Stevenson… - Structure, 2017 - cell.com
TldD and TldE proteins are involved in the biosynthesis of microcin B17 (MccB17), an
Escherichia coli thiazole/oxazole-modified peptide toxin targeting DNA gyrase. Using a …

Structure of microcin B-like compounds produced by Pseudomonas syringae and species specificity of their antibacterial action

M Metelev, M Serebryakova, D Ghilarov… - Journal of …, 2013 - Am Soc Microbiol
Escherichia coli microcin B (Ec-McB) is a posttranslationally modified antibacterial peptide
containing multiple oxazole and thiazole heterocycles and targeting the DNA gyrase. We …

Revealing nature's synthetic potential through the study of ribosomal natural product biosynthesis

KL Dunbar, DA Mitchell - ACS chemical biology, 2013 - ACS Publications
Ribosomally synthesized posttranslationally modified peptides (RiPPs) are a rapidly
growing class of natural products with diverse structures and activities. In recent years, a …