Sequencing technologies and genome sequencing

CS Pareek, R Smoczynski, A Tretyn - Journal of applied genetics, 2011 - Springer
The high-throughput-next generation sequencing (HT-NGS) technologies are currently the
hottest topic in the field of human and animals genomics researches, which can produce …

The impact of next-generation sequencing technology on genetics

ER Mardis - Trends in genetics, 2008 - cell.com
If one accepts that the fundamental pursuit of genetics is to determine the genotypes that
explain phenotypes, the meteoric increase of DNA sequence information applied toward that …

[HTML][HTML] Long noncoding RNAs with enhancer-like function in human cells

UA Ørom, T Derrien, M Beringer, K Gumireddy… - Cell, 2010 - cell.com
While the long noncoding RNAs (ncRNAs) constitute a large portion of the mammalian
transcriptome, their biological functions has remained elusive. A few long ncRNAs that have …

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Management Group Liefer Laura A. 51 Wetterstrand … - nature, 2007 - nature.com
We report the generation and analysis of functional data from multiple, diverse experiments
performed on a targeted 1% of the human genome as part of the pilot phase of the ENCODE …

Global mapping of binding sites for Nrf2 identifies novel targets in cell survival response through ChIP-Seq profiling and network analysis

D Malhotra, E Portales-Casamar, A Singh… - Nucleic acids …, 2010 - academic.oup.com
The Nrf2 (nuclear factor E2 p45-related factor 2) transcription factor responds to diverse
oxidative and electrophilic environmental stresses by circumventing repression by Keap1 …

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

G Robertson, M Hirst, M Bainbridge, M Bilenky… - Nature …, 2007 - nature.com
We developed a method, ChIP-sequencing (ChIP-seq), combining chromatin
immunoprecipitation (ChIP) and massively parallel sequencing to identify mammalian DNA …

An extended transcriptional network for pluripotency of embryonic stem cells

J Kim, J Chu, X Shen, J Wang, SH Orkin - Cell, 2008 - cell.com
Much attention has focused on a small set of transcription factors that maintain human or
mouse embryonic stem (ES) cells in a pluripotent state. To gain a more complete …

[HTML][HTML] Unlinking an lncRNA from its associated cis element

VR Paralkar, CC Taborda, P Huang, Y Yao… - Molecular cell, 2016 - cell.com
Long non-coding (lnc) RNAs can regulate gene expression and protein functions. However,
the proportion of lncRNAs with biological activities among the thousands expressed in …

Regulation and function of the human HSP90AA1 gene

AD Zuehlke, K Beebe, L Neckers, T Prince - Gene, 2015 - Elsevier
Heat shock protein 90α (Hsp90α), encoded by the HSP90AA1 gene, is the stress inducible
isoform of the molecular chaperone Hsp90. Hsp90α is regulated differently and has different …

[HTML][HTML] PPARγ in adipocyte differentiation and metabolism–novel insights from genome-wide studies

R Siersbæk, R Nielsen, S Mandrup - FEBS letters, 2010 - Elsevier
Adipocyte differentiation is controlled by a tightly regulated transcriptional cascade in which
PPARγ and members of the C/EBP family are key players. Here we review the roles of …