Cyclic di-GMP: the first 25 years of a universal bacterial second messenger

U Römling, MY Galperin… - … and Molecular Biology …, 2013 - Am Soc Microbiol
Twenty-five years have passed since the discovery of cyclic dimeric (3′→ 5′) GMP (cyclic
di-GMP or c-di-GMP). From the relative obscurity of an allosteric activator of a bacterial …

“It's a gut feeling” – Escherichia coli biofilm formation in the gastrointestinal tract environment

E Rossi, A Cimdins, P Lüthje, A Brauner… - Critical reviews in …, 2018 - Taylor & Francis
Escherichia coli can commonly be found, either as a commensal, probiotic or a pathogen, in
the human gastrointestinal (GI) tract. Biofilm formation and its regulation is surprisingly …

Genome-Wide Detection of Fitness Genes in Uropathogenic Escherichia coli during Systemic Infection

S Subashchandrabose, SN Smith, RR Spurbeck… - PLoS …, 2013 - journals.plos.org
Uropathogenic Escherichia coli (UPEC) is a leading etiological agent of bacteremia in
humans. Virulence mechanisms of UPEC in the context of urinary tract infections have been …

Systematic nomenclature for GGDEF and EAL domain-containing cyclic di-GMP turnover proteins of Escherichia coli

R Hengge, MY Galperin, JM Ghigo… - Journal of …, 2016 - Am Soc Microbiol
In recent years, Escherichia coli has served as one of a few model bacterial species for
studying cyclic di-GMP (c-di-GMP) signaling. The widely used E. coli K-12 laboratory strains …

Genetic programming of catalytic Pseudomonas putida biofilms for boosting biodegradation of haloalkanes

I Benedetti, V de Lorenzo, PI Nikel - Metabolic engineering, 2016 - Elsevier
Bacterial biofilms outperform planktonic counterparts in whole-cell biocatalysis. The
transition between planktonic and biofilm lifestyles of the platform strain Pseudomonas …

Cyclic‐di‐GMP regulation of virulence in bacterial pathogens

CL Hall, VT Lee - Wiley Interdisciplinary Reviews: RNA, 2018 - Wiley Online Library
Signaling pathways allow bacteria to adapt to changing environments. For pathogenic
bacteria, signaling pathways allow for timely expression of virulence factors and the …

QSP: An open sequence database for quorum sensing related gene analysis with an automatic annotation pipeline

C Dai, Y Qu, W Wu, S Li, Z Chen, S Lian, J Jing - Water research, 2023 - Elsevier
Quorum sensing (QS) has attracted great attention due to its important role in the bacterial
interactions and its relevance to water management. With the development of high …

Characterization of a natural triple-tandem c-di-GMP riboswitch and application of the riboswitch-based dual-fluorescence reporter

H Zhou, C Zheng, J Su, B Chen, Y Fu, Y Xie, Q Tang… - Scientific reports, 2016 - nature.com
Abstract c-di-GMP riboswitches are structured RNAs located in the 5′-untranslated regions
(5′-UTRs) of mRNAs that regulate expression of downstream genes in response to …

Bacterial diguanylate cyclases: structure, function and mechanism in exopolysaccharide biofilm development

CG Whiteley, DJ Lee - Biotechnology advances, 2015 - Elsevier
The ubiquitous bacterial cyclic di-guanosine monophosphate (c-di-GMP) emerges as an
important messenger for the control of many bacterial cellular functions including virulence …

High levels of cyclic diguanylate interfere with beneficial bacterial colonization

RY Isenberg, DG Christensen, KL Visick, MJ Mandel - MBio, 2022 - Am Soc Microbiol
During colonization of the Hawaiian bobtail squid (Euprymna scolopes), Vibrio fischeri
bacteria undergo a lifestyle transition from a planktonic motile state in the environment to a …