Mutual linearity of nonequilibrium network currents
For continuous-time Markov chains and open unimolecular chemical reaction networks, we
prove that any two stationary currents are linearly related upon perturbations of a single …
prove that any two stationary currents are linearly related upon perturbations of a single …
General theory of static response for markov jump processes
T Aslyamov, M Esposito - Physical Review Letters, 2024 - APS
We consider Markov jump processes on a graph described by a rate matrix that depends on
various control parameters. We derive explicit expressions for the static responses of edge …
various control parameters. We derive explicit expressions for the static responses of edge …
Dissipation bounds precision of current response to kinetic perturbations
The precision of currents in Markov networks is bounded by dissipation via the so-called
thermodynamic uncertainty relation (TUR). In our Letter, we demonstrate a similar inequality …
thermodynamic uncertainty relation (TUR). In our Letter, we demonstrate a similar inequality …
Stochastic thermodynamics for biological functions
Living systems operate within physical constraints imposed by nonequilibrium
thermodynamics. This review explores recent advancements in applying these principles to …
thermodynamics. This review explores recent advancements in applying these principles to …
Nonequilibrium fluctuation-response relations: From identities to bounds
T Aslyamov, K Ptaszyński, M Esposito - arXiv preprint arXiv:2410.17140, 2024 - arxiv.org
In nonequilibrium steady states of Markov jump processes, we derive exact Fluctuation-
Response Relations (FRRs) that express the covariance between any pair of currents in …
Response Relations (FRRs) that express the covariance between any pair of currents in …
Structural constraints limit the regime of optimal flux in autocatalytic reaction networks
A Despons, Y De Decker, D Lacoste - Communications Physics, 2024 - nature.com
Autocatalytic chemical networks play a predominant role in a large number of natural
systems such as in metabolic pathways and in ecological networks. Despite recent efforts …
systems such as in metabolic pathways and in ecological networks. Despite recent efforts …
A local–global principle for nonequilibrium steady states
The global steady state of a system in thermal equilibrium exponentially favors
configurations with lesser energy. This principle is a powerful explanation of self …
configurations with lesser energy. This principle is a powerful explanation of self …
Thermodynamic constraints on kinetic perturbations of homogeneous driven diffusions
Q Gao, HM Chun, JM Horowitz - Europhysics Letters, 2024 - iopscience.iop.org
We analyze the static response to kinetic perturbations of nonequilibrium steady states that
can be modeled as diffusions. We demonstrate that kinetic response is purely a …
can be modeled as diffusions. We demonstrate that kinetic response is purely a …
Limits on the computational expressivity of non-equilibrium biophysical processes
Many biological decision-making processes can be viewed as performing a classification
task over a set of inputs, using various chemical and physical processes as" biological …
task over a set of inputs, using various chemical and physical processes as" biological …
[HTML][HTML] Steady-state probabilities for Markov jump processes in terms of powers of the transition rate matrix
D Frezzato - The Journal of Chemical Physics, 2024 - pubs.aip.org
Several types of dynamics at stationarity can be described in terms of a Markov jump
process among a finite number N of representative sites. Before dealing with the dynamical …
process among a finite number N of representative sites. Before dealing with the dynamical …