De novo domestication: an alternative route toward new crops for the future

AR Fernie, J Yan - Molecular plant, 2019 - cell.com
Current global agricultural production must feed over 7 billion people. However, productivity
varies greatly across the globe and is under threat from both increased competitions for land …

Exploring the diversity of plant metabolism

C Fang, AR Fernie, J Luo - Trends in Plant Science, 2019 - cell.com
Plants produce a huge array of metabolites, far more than those produced by most other
organisms. Unraveling this diversity and its underlying genetic variation has attracted …

Metabolomics 20 years on: what have we learned and what hurdles remain?

S Alseekh, AR Fernie - The Plant Journal, 2018 - Wiley Online Library
The term metabolome was coined in 1998, by analogy to genome, transcriptome and
proteome. The first research papers using the terms metabolomics, metabonomics …

Beans (Phaseolus ssp.) as a Model for Understanding Crop Evolution

E Bitocchi, D Rau, E Bellucci, M Rodriguez… - Frontiers in plant …, 2017 - frontiersin.org
Here, we aim to provide a comprehensive and up-to-date overview of the most significant
outcomes in the literature regarding the origin of Phaseolus genus, the geographical …

Improved genome assembly and pan‐genome provide key insights into eggplant domestication and breeding

L Barchi, MT Rabanus‐Wallace, J Prohens… - The Plant …, 2021 - Wiley Online Library
Eggplant (Solanum melongena L.) is an important horticultural crop and one of the most
widely grown vegetables from the Solanaceae family. It was domesticated from a wild …

[HTML][HTML] Integrating multi-omics data for crop improvement

F Scossa, S Alseekh, AR Fernie - Journal of plant physiology, 2021 - Elsevier
Our agricultural systems are now in urgent need to secure food for a growing world
population. To meet this challenge, we need a better characterization of plant genetic and …

Evolutionary history of plant metabolism

HA Maeda, AR Fernie - Annual Review of Plant Biology, 2021 - annualreviews.org
Tremendous chemical diversity is the hallmark of plants and is supported by highly complex
biochemical machinery. Plant metabolic enzymes originated and were transferred from …

Domestication of crop metabolomes: desired and unintended consequences

S Alseekh, F Scossa, W Wen, J Luo, J Yan… - Trends in Plant …, 2021 - cell.com
The majority of the crops and vegetables of today were domesticated from their wild
progenitors within the past 12 000 years. Considerable research effort has been expended …

Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes

A Vlasova, S Capella-Gutiérrez, M Rendón-Anaya… - Genome biology, 2016 - Springer
Background Legumes are the third largest family of angiosperms and the second most
important crop class. Legume genomes have been shaped by extensive large-scale gene …

A metabolic perspective of selection for fruit quality related to apple domestication and improvement

Q Lin, J Chen, X Liu, B Wang, Y Zhao, L Liao, AC Allan… - Genome Biology, 2023 - Springer
Background Apple is an economically important fruit crop. Changes in metabolism
accompanying human-guided evolution can be revealed using a multiomics approach. We …