Single-cell and spatial transcriptomics: Bridging current technologies with long-read sequencing
CU Yuan, FX Quah, M Hemberg - Molecular Aspects of Medicine, 2024 - Elsevier
Single-cell technologies have transformed biomedical research over the last decade,
opening up new possibilities for understanding cellular heterogeneity, both at the genomic …
opening up new possibilities for understanding cellular heterogeneity, both at the genomic …
Unveiling aging dynamics in the hematopoietic system insights from single-cell technologies
X Jin, R Zhang, Y Fu, Q Zhu, L Hong… - Briefings in …, 2024 - academic.oup.com
As the demographic structure shifts towards an aging society, strategies aimed at slowing
down or reversing the aging process become increasingly essential. Aging is a major …
down or reversing the aging process become increasingly essential. Aging is a major …
[HTML][HTML] Deciphering the spatiotemporal transcriptional and chromatin accessibility of human retinal organoid development at the single-cell level
B Dorgau, J Collin, A Rozanska, V Boczonadi… - Iscience, 2024 - cell.com
Molecular information on the early stages of human retinal development remains scarce due
to limitations in obtaining early human eye samples. Pluripotent stem cell-derived retinal …
to limitations in obtaining early human eye samples. Pluripotent stem cell-derived retinal …
Interrogations of single-cell RNA splicing landscapes with SCASL define new cell identities with physiological relevance
X Xiang, Y He, Z Zhang, X Yang - Nature Communications, 2024 - nature.com
RNA splicing shapes the gene regulatory programs that underlie various physiological and
disease processes. Here, we present the SCASL (single-cell clustering based on alternative …
disease processes. Here, we present the SCASL (single-cell clustering based on alternative …
Advances in single-cell long-read sequencing technologies
P Gupta, H O'Neill, EJ Wolvetang… - NAR Genomics and …, 2024 - academic.oup.com
With an increase in accuracy and throughput of long-read sequencing technologies, they
are rapidly being assimilated into the single-cell sequencing pipelines. For transcriptome …
are rapidly being assimilated into the single-cell sequencing pipelines. For transcriptome …
Maternal Innate Immune Reprogramming After Complicated Pregnancy
Problem Preeclampsia (PE) and fetal growth restriction (FGR) are often associated with
maternal inflammation and an increased risk of cardiovascular and metabolic disease in the …
maternal inflammation and an increased risk of cardiovascular and metabolic disease in the …
stMMR: accurate and robust spatial domain identification from spatially resolved transcriptomics with multi-modal feature representation
D Zhang, N Yu, W Li, X Sun, Q Zou, X Li, Z Liu, Z Yuan… - bioRxiv, 2024 - biorxiv.org
Deciphering spatial domains using spatially resolved transcriptomics (SRT) is of great value
for the characterizing and understanding of tissue architecture. However, the inherent …
for the characterizing and understanding of tissue architecture. However, the inherent …
[HTML][HTML] Long-read single-cell RNA sequencing enables the study of cancer subclone-specific genotype and phenotype in chronic lymphocytic leukemia
Bruton's tyrosine kinase (BTK) inhibitors are effective for the treatment of chronic lymphocytic
leukemia (CLL) due to BTK's role in B cell survival and proliferation. Treatment resistance is …
leukemia (CLL) due to BTK's role in B cell survival and proliferation. Treatment resistance is …
[HTML][HTML] Splicing the Difference: Harnessing the complexity of the transcriptome in hematopoiesis
HM Maul-Newby, S Halene - Experimental Hematology, 2024 - Elsevier
Alternative splicing has long been recognized as a powerful tool to expand the diversity of
the transcriptome and the proteome. The study of hematopoiesis, from hematopoietic stem …
the transcriptome and the proteome. The study of hematopoiesis, from hematopoietic stem …
Data-guided direct reprogramming of human fibroblasts into the hematopoietic lineage
C Stansbury, J Cwycyshyn, J Pickard, W Meixner… - bioRxiv, 2024 - biorxiv.org
Direct reprogramming of human fibroblasts into hematopoietic stem cells (HSCs) presents a
promising strategy for overcoming the limitations of traditional bone-marrow transplantation …
promising strategy for overcoming the limitations of traditional bone-marrow transplantation …