Supervised machine learning for population genetics: a new paradigm

DR Schrider, AD Kern - Trends in Genetics, 2018 - cell.com
As population genomic datasets grow in size, researchers are faced with the daunting task
of making sense of a flood of information. To keep pace with this explosion of data …

Importance of genetic diversity assessment in crop plants and its recent advances: an overview of its analytical perspectives

M Govindaraj, M Vetriventhan… - Genetics research …, 2015 - Wiley Online Library
The importance of plant genetic diversity (PGD) is now being recognized as a specific area
since exploding population with urbanization and decreasing cultivable lands are the critical …

Genomic inference of a severe human bottleneck during the Early to Middle Pleistocene transition

W Hu, Z Hao, P Du, F Di Vincenzo, G Manzi, J Cui… - Science, 2023 - science.org
Population size history is essential for studying human evolution. However, ancient
population size history during the Pleistocene is notoriously difficult to unravel. In this study …

Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution

C Li, M Olave, Y Hou, G Qin, RF Schneider… - Nature …, 2021 - nature.com
Seahorses have a circum-global distribution in tropical to temperate coastal waters. Yet,
seahorses show many adaptations for a sedentary, cryptic lifestyle: they require specific …

Making sense of genomic islands of differentiation in light of speciation

JBW Wolf, H Ellegren - Nature Reviews Genetics, 2017 - nature.com
As populations diverge, genetic differences accumulate across the genome. Spurred by
rapid developments in sequencing technology, genome-wide population surveys of natural …

PopGenome: an efficient Swiss army knife for population genomic analyses in R

B Pfeifer, U Wittelsbürger… - Molecular biology …, 2014 - academic.oup.com
Although many computer programs can perform population genetics calculations, they are
typically limited in the analyses and data input formats they offer; few applications can …

Evidence for archaic adaptive introgression in humans

F Racimo, S Sankararaman, R Nielsen… - Nature Reviews …, 2015 - nature.com
As modern and ancient DNA sequence data from diverse human populations accumulate,
evidence is increasing in support of the existence of beneficial variants acquired from …

Detecting natural selection in genomic data

JJ Vitti, SR Grossman, PC Sabeti - Annual review of genetics, 2013 - annualreviews.org
The past fifty years have seen the development and application of numerous statistical
methods to identify genomic regions that appear to be shaped by natural selection. These …

Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs

O Thalmann, B Shapiro, P Cui, VJ Schuenemann… - Science, 2013 - science.org
The geographic and temporal origins of the domestic dog remain controversial, as genetic
data suggest a domestication process in East Asia beginning 15,000 years ago, whereas …

[引用][C] Phylogeography: The History and Formation of Species

JC Avise - 2000 - books.google.com
Phylogeography is a discipline concerned with various relationships between gene
genealogies—phylogenetics—and geography. The word “phylogeography” was coined in …