Supervised machine learning for population genetics: a new paradigm
DR Schrider, AD Kern - Trends in Genetics, 2018 - cell.com
As population genomic datasets grow in size, researchers are faced with the daunting task
of making sense of a flood of information. To keep pace with this explosion of data …
of making sense of a flood of information. To keep pace with this explosion of data …
Importance of genetic diversity assessment in crop plants and its recent advances: an overview of its analytical perspectives
M Govindaraj, M Vetriventhan… - Genetics research …, 2015 - Wiley Online Library
The importance of plant genetic diversity (PGD) is now being recognized as a specific area
since exploding population with urbanization and decreasing cultivable lands are the critical …
since exploding population with urbanization and decreasing cultivable lands are the critical …
Genomic inference of a severe human bottleneck during the Early to Middle Pleistocene transition
Population size history is essential for studying human evolution. However, ancient
population size history during the Pleistocene is notoriously difficult to unravel. In this study …
population size history during the Pleistocene is notoriously difficult to unravel. In this study …
Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution
C Li, M Olave, Y Hou, G Qin, RF Schneider… - Nature …, 2021 - nature.com
Seahorses have a circum-global distribution in tropical to temperate coastal waters. Yet,
seahorses show many adaptations for a sedentary, cryptic lifestyle: they require specific …
seahorses show many adaptations for a sedentary, cryptic lifestyle: they require specific …
Making sense of genomic islands of differentiation in light of speciation
JBW Wolf, H Ellegren - Nature Reviews Genetics, 2017 - nature.com
As populations diverge, genetic differences accumulate across the genome. Spurred by
rapid developments in sequencing technology, genome-wide population surveys of natural …
rapid developments in sequencing technology, genome-wide population surveys of natural …
PopGenome: an efficient Swiss army knife for population genomic analyses in R
B Pfeifer, U Wittelsbürger… - Molecular biology …, 2014 - academic.oup.com
Although many computer programs can perform population genetics calculations, they are
typically limited in the analyses and data input formats they offer; few applications can …
typically limited in the analyses and data input formats they offer; few applications can …
Evidence for archaic adaptive introgression in humans
As modern and ancient DNA sequence data from diverse human populations accumulate,
evidence is increasing in support of the existence of beneficial variants acquired from …
evidence is increasing in support of the existence of beneficial variants acquired from …
Detecting natural selection in genomic data
JJ Vitti, SR Grossman, PC Sabeti - Annual review of genetics, 2013 - annualreviews.org
The past fifty years have seen the development and application of numerous statistical
methods to identify genomic regions that appear to be shaped by natural selection. These …
methods to identify genomic regions that appear to be shaped by natural selection. These …
Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs
O Thalmann, B Shapiro, P Cui, VJ Schuenemann… - Science, 2013 - science.org
The geographic and temporal origins of the domestic dog remain controversial, as genetic
data suggest a domestication process in East Asia beginning 15,000 years ago, whereas …
data suggest a domestication process in East Asia beginning 15,000 years ago, whereas …
[引用][C] Phylogeography: The History and Formation of Species
JC Avise - 2000 - books.google.com
Phylogeography is a discipline concerned with various relationships between gene
genealogies—phylogenetics—and geography. The word “phylogeography” was coined in …
genealogies—phylogenetics—and geography. The word “phylogeography” was coined in …